BAC Information

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BAC

Clone NameMSMg01-308P11
Chromosome15 (Build37)
Map Location 55,769,670 - 55,769,960
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039911, LOC100039822, Taf2, 2600005O03Rik, Depdc6, Col14a1, Mrpl13, Mtbp, Sntb1
Downstream geneLOC665348, LOC100039908, Hba-ps3, Has2, EG594843, LOC435442, LOC100040067
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308P11.T7 (MSMg01no308_p11.b1)MSMg01-308P11.TJ (MSMg01no308_p11.g1)
ACCAG432894AG432895
length743742
length of high quality
(start - end)
317 (46 - 362)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no308_p11.b1 PHD_FILE: MSMg01no308_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:25 2005CHROMAT_FILE: MSMg01no308_p11.g1 PHD_FILE: MSMg01no308_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAAGGAAAAAAAAATCAAACCAACCTCCCCCAATAACAACAACAA
CAAAAACAAAAAACAAAACAACAACAAAAACAAAAACAAACCAAAAACCA
ATGATATCCAAAGAGTATACTTATTAAGTGTTCAAAGATAATGAGCTAAG
CTATAAGGCTGTGCAATCTTAACATCTTAGTTACTTTTCTAATGCTGTGA
AGTCCTTCATAAGGACTGAAGCAACTTATAAAACAATACATTCTATTTGA
GGTCTTGCTTACAGTTTCAGAGGAGGAGCCCATGAACACCATGCTGGGGA
ATACGGGAATAGGTATGTAGGCATACAATTGCAGCAGAAGCTAAGAACTC
ACATCTAATCCACAGGCACGAGACAGAGAGAGCATTAACTAGGAATGAAG
CAGACTTTTGAAATCTCAAATTCTGCCTCCAGTGACATCGTTTCTGTAAC
AAGGCCACACCTACCAATCCTTCTGGAAAACATTTTCACCAACTATATGA
ACATAGTGGGGGCGTTCTCCACCAAACCACCAAACTTAACAAAGCATAAC
TCCTAAAGTTTTGGATTCTTTTCCAACTTTCCCATAAGAGTCACCACCTA
CTTTAACCCAGTCTTCCTGTCCCACCAAGTTTGTCCTTATCCCCAGAGGA
GGGGAGGGGTGTTCCTGAGAGTCAGGATTTCATAGAGGTGGGA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGGTGGTTGGGAGTTTTGGAACA
TGGTGAAGAATCTTATAAGTAACTTAATTATGGAAAAATGTTGAGATGCT
AAGAAGTAAGACTTGTATAAGGTGGAACACACAAATAAAAATGACTCAAA
AATAGCATTTCCCTTGTATTCCTCTATTTAATCCTAAGAAACTGGCAAAA
TATTCAGTCACTGACATTATCCTGGACTCTTCCTATCTAGGACTGCATCT
GAATGTAGAATATTTAAGAGCTACCAAAAGACAGACTAAGAAGCAAAATA
AACAAAATGGCTTTCTATTATCCAATCTCAGCCGCGGACGACCAGTGTCT
CAGCCTTGGAGTCTAACCCCACAGTAATTCTTCTGTCCCATAGTGTCTTA
GAGTTGTTAATGTCTTGCCACTGCTGGGATCTGGAACCACTCTCATGCAC
TTTGAACTTTAACATGCCTGACCTTCTTTCAAGGCAACTCCACAGCAGCA
GATAACAAATACTTAGCTCTTTTGGTCTGGAGACACAAAAATCTCTCTTC
CTTTCCCTCTGCAGGGACCCTTTTCTTTGCCTATGAAGGTTTCCCCCTTG
GACATCATCTTTTAAGCACAAAAGGAGTCAGTGTCTTCAGGGTGATTTTT
TTCCTAGGGCTTTGGCTCCTACCAGGTATAGAAGGTAAGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_p11.g1 MSMg01no308_p11.g1 CHROMAT_FILE:
MSMg01no308_p11.g1 PHD_FILE: MSMg01no308_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:25 2005
         (292 letters)



>mm_chr15_55769470_55770161
          Length = 692

 Score =  532 bits (275), Expect = e-155
 Identities = 287/291 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggtggttgggagttttggaacatggtgaagaatcttataagtaacttaattatggaaa 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 atggtggttgggagctttggaacatggtgaagaatcttataagtaacttaattatggaaa 432

                                                                       
Query: 61  aatgttgagatgctaagaagtaagacttgtataaggtggaacacacaaataaaaatgact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aatgttgagatgctaagaagtaagacttgtataaggtggaacacacaaataaaaatgact 372

                                                                       
Query: 121 caaaaatagcatttcccttgtattcctctatttaatcctaagaaactggcaaaatattca 180
           ||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 371 caaaaatagcattccccttgtattcctctatctaatcctaagaagctggcaaaatattca 312

                                                                       
Query: 181 gtcactgacattatcctggactcttcctatctaggactgcatctgaatgtagaatattta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gtcactgacattatcctggactcttcctatctaggactgcatctgaatgtagaatattta 252

                                                              
Query: 241 agagctaccaaaagacagactaagaagcaaaataaacaaaatggctttcta 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 agagctaccaaaagacagactaagaagcaaaataaacaaaatggctttcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)