BAC Information

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BAC

Clone NameMSMg01-309G07
Chromosome15 (Build37)
Map Location 18,500,955 - 18,501,269
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040162, LOC666835, LOC666839
Downstream geneCdh10, EG666857, EG666875, LOC621884
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309G07.T7 (MSMg01no309_g07.b1)MSMg01-309G07.TJ (MSMg01no309_g07.g1)
ACCAG433195AG433196
length715804
length of high quality
(start - end)
320 (37 - 356)242 (77 - 318)
definitionCHROMAT_FILE: MSMg01no309_g07.b1 PHD_FILE: MSMg01no309_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:58 2005CHROMAT_FILE: MSMg01no309_g07.g1 PHD_FILE: MSMg01no309_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGA
TTTTGTGTTCCAAAGGCATGAAATCTGCAGAATAAATTTATTGATTGCTG
TCCTATAAAACATTGAATATTTTAACTTACTAGCCTATTACATTTTAGCT
CAGTCTTTTGAAATATTTTCTTTTAATAATTTAAAGTGTCCTTGTAATGC
CTTTGTTTGTGTTTTGCTTAATACACCACTAAATATTTTATTTAAAACTT
CATAAATATAGTATATCAACAACACATAAATAAATGTTCTGGACTCTTGT
GATTTCAACTCAATGCACTTATTTGAAATGTAAGTTAAAGTCTTCTTACA
TTTATTTGTGTGCACCTCCCCCCGTGTGTGTGCGTGTGTGTGTGCATGCG
TGCGCGCCCCCCTGTGTATAAGTGTTCGTATATGTACCTGTTTACAAACT
TGCCCACATGTTCTTATCATCATGTTTCCAGCTATATGTTCTCCTGTACC
TTGAGTTGCATGTGATGCTGAGACACCAACTGATCTTGGACCTCTCTTTA
TTTTTCCTTTTTACCTAACCCCCTCGTTTTTTTCTTGTTTTTCTCACCCT
TCCCTCTCTTTTTTTACCTTCTCTCTTTGTTTCTTTTCTCCCCCTCACCC
CTACTTTTTTTTTTGTTCATATCCCATATATCAGTCCTTATCATATTCCC
CCTTCTTTCTATTTG
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAACTAAAAATCTCAGTCTTAATC
TGCCCCCCCCACAAGATCTTTAAAACACTGGACCACCAAACAGACAGCAT
ATACCAGCTGATATGAGGTCCCCAACACACATACAATAGAGGACTTCCAG
GTCTATGTTCATTCAGAAATGAAGCACCTAACCCTCAATGGACTCGAAGC
CCCAGGAAATTTAGTGGTCAGGTGGAGTGGGGCGGGGGGGGGGGATCCAT
GTGGAGATGGGGTGAGGNNNNTTTTTTTTTTNTTTGTTTTTTCTTTTTGT
TTTTTTGGTTTTTTTTTTTTTGTTTCGTCGCTCCATTTTCTTCCAGCATT
ATTATTTCTTTCTTTTCTCAACCACCCCTTTTTACTAAAACATCATCCTT
TTTTCTACCTATTCCCCCCCTCTTTCTATTTGTCCTTTTTTCTTCTGTTT
CTGGTACAGCCATGTTCACCTTCGTCACTTTTTCCTCTCTCGCCTTGCGT
TGTGTTTTCCTCCAAAGCCTGTAATTTCTCTTATTCCCCCCCAAATTTTG
TCAATATTATTAGTCGTATCCTACATTTACGTCATTCTTTTTATTCTTTA
TACCGTTCTCTTCGATCTGTTTCTTTTGTTATTATCTATTCTTTTTTCCT
TCCTGCTCTGATAAATACACTAAAAGATGCATACGCACCTCCCAAGCGGT
GCTTTTGCTTTTTTCTTTTTTCGCATTAAACTTTTTCTGATATCTGTCTC
TTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_g07.b1 MSMg01no309_g07.b1 CHROMAT_FILE:
MSMg01no309_g07.b1 PHD_FILE: MSMg01no309_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:58 2005
         (320 letters)



>mm_chr15_18500751_18501470
          Length = 720

 Score =  588 bits (304), Expect = e-172
 Identities = 313/316 (99%), Gaps = 2/316 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagattttgtgttcca-aaggcatgaaatctgcagaataaatttattgattgct 63
           ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattccagattttgtgtt-cagaaggcatgaaatctgcagaataaatttattgattgct 461

                                                                       
Query: 64  gtcctataaaacattgaatattttaacttactagcctattacattttagctcagtctttt 123
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gtcctataaaacattgaattttttaacttactagcctattacattttagctcagtctttt 401

                                                                       
Query: 124 gaaatattttcttttaataatttaaagtgtccttgtaatgcctttgtttgtgttttgctt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gaaatattttcttttaataatttaaagtgtccttgtaatgcctttgtttgtgttttgctt 341

                                                                       
Query: 184 aatacaccactaaatattttatttaaaacttcataaatatagtatatcaacaacacataa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 aatacaccactaaatattttatttaaaacttcataaatatagtatatcaacaacacataa 281

                                                                       
Query: 244 ataaatgttctggactcttgtgatttcaactcaatgcacttatttgaaatgtaagttaaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ataaatgttctggactcttgtgatttcaactcaatgcacttatttgaaatgtaagttaaa 221

                           
Query: 304 gtcttcttacatttat 319
           ||||||||||||||||
Sbjct: 220 gtcttcttacatttat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)