Query= MSMg01no311_a11.b1 MSMg01no311_a11.b1 CHROMAT_FILE:
MSMg01no311_a11.b1 PHD_FILE: MSMg01no311_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:46 2005
(601 letters)
>mm_chr15_91689200_91690201
Length = 1002
Score = 897 bits (464), Expect = 0.0
Identities = 505/522 (96%), Gaps = 8/522 (1%)
Strand = Plus / Minus
Query: 5 gaattcaaatcattcatcagaccaggtcacaaaattcttttcattaaatgctgtgcatgg 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 gaattcaaatcactcatcagaccaggtcacaaaattcttttcattaaatgctgtgcatgg 472
Query: 65 aattccttcttcccctcacagttcagccagacgattgcatagttgttggcaaattgtgtt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 aattccttcttcccctcacagttcagccagacgattgcatagttgttggcaaattgtgtt 412
Query: 125 tggcaaaggtgatcaaaaaacctcctcataaaaatatctgacaagaaacatccaggtttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tggcaaaggtgatcaaaaaacctcctcataaaaatatctgacaagaaacatccaggtttt 352
Query: 185 agcttatcagaaaaatcttcttccaaattcacaaaaatcagtgtcagcaatgggctttga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 agcttatcagaaaaatcttcttccaaattcacaaaaatcagtgtcagcaatgggctttga 292
Query: 245 cccagaccattgatcaatcacaacactgtcttgcacttaaggaatcctctaccaaagcat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 cccagaccattgatcaatcacaacactgtcttgcacttaaggaatcctctaccaaagcat 232
Query: 305 cagactctacaaatgggaaaaaaaaacaaaccaaaccaaaccaaaccaagccaagccaaa 364
||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 231 cagactctacaaatggggaaaaaaaa--aac-aaaccaaaccaaaccaagccaagccaaa 175
Query: 365 ccaaccccagccaaaccaaaccaatctaaaccaaaccaaaccaaaccaaaccaaaccaaa 424
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 ccaagtcaagccaaaccaaaccaatctaaaccaaaccaaaccaaaccaaaccaaaccaaa 115
Query: 425 ccaaaccaaaccaagccaagccaagccaagccaagccaaaccaaaccaaaccaaaccaaa 484
|||| |||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 114 ccaagccaa-----gccaagccaagccaagccaagccaaaccaaaccaaaccaaacaaaa 60
Query: 485 ccaaaccaaacaaaacaaaacaaaacaaaacaaaacaaaaca 526
| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 59 caaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaaca 18
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 113
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1002
Length adjustment: 10
Effective length of query: 591
Effective length of database: 992
Effective search space: 586272
Effective search space used: 586272
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no311_a11.g1 MSMg01no311_a11.g1 CHROMAT_FILE:
MSMg01no311_a11.g1 PHD_FILE: MSMg01no311_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:46 2005
(347 letters)
>mm_chr15_91514052_91514798
Length = 747
Score = 598 bits (309), Expect = e-175
Identities = 336/345 (97%)
Strand = Plus / Plus
Query: 1 tgtgtgcagagctgcaaaagcctgagaaggctcaagggaggctgctcagggcggtgggag 60
||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||
Sbjct: 201 tgtgtgcagagctgcaaaagcctgagaaggcacaagggaggctgcacaggggggtgggag 260
Query: 61 acactcatgtactaattgtccctgctaatgaagaccttcaggagagaaaagcagtaagaa 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acactcatgtactaattgttcctgctaatgaagaccttcaggagagaaaagcagtaagaa 320
Query: 121 agagtgtaagacccagggcacagaggacaggaaacaggagactcccaaagagcatttaat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 agagtgtaagacccagggcacagaggacaggaaacaggagactcccaaagagtgtttaat 380
Query: 181 tcaatgatttaatggcatgtagttgcaactctcatccttgggactgtcaccgttttcctt 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 tcaatgatttaatggcatgtagttgcaactctcatccttgggactgtcacagttttcctt 440
Query: 241 ggttcatttctcttttgtcacaatcgagccctcactccagtggcccttccgctatgttgc 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 ggttcatttctcttttgtcacaatcgagccctcactccagtggcccttccgctatggtgg 500
Query: 301 aaatgttgctacccattgtcacaacaagcagctctatgtgactct 345
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaatgttgctacccattgtcacaacaagcagctctatgtgactct 545
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space: 249444
Effective search space used: 249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
