BAC Information

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BAC

Clone NameMSMg01-311B24
Chromosome15 (Build37)
Map Location 99,447,437 - 99,447,751
singlet/doubletsinglet
Overlap genenone
Upstream geneCacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6
Downstream geneRacgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311B24.T7 (MSMg01no311_b24.b1)MSMg01-311B24.TJ (MSMg01no311_b24.g1)
ACCAG433715AG433716
length752822
length of high quality
(start - end)
320 (52 - 371)148 (75 - 222)
definitionCHROMAT_FILE: MSMg01no311_b24.b1 PHD_FILE: MSMg01no311_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:53 2005CHROMAT_FILE: MSMg01no311_b24.g1 PHD_FILE: MSMg01no311_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCCAAGTTCTAATCCCAGGTCAACTATAGTTTGTGGACAT
TTGGGTCAAATCATCTCACTGAATTTACCAACTGGGACACACCCACCCAT
CCTTCTGGCCTCTGAGGGCACGGTGAGGGCAAGTAATAACACTTGAATAG
ACTAAATCACTATGTAAGTGTCCTAGAGGCTTGGAGAGGTGGCTCAGCAG
TTGAGAGCACTGGCTGCTGGTGCAGAGGACCAGGGTTCCACTCACAGCAT
ACACCCGGTGACAAGAGGCATCTGCGATCACATTTGTAGGGGATCCGGCA
TCTTCTTCATGGGCACTGATTTCATAANNTCCCAGNACAANANCGCCCGA
TATATTTTGAAGAATTAGAGTAAATCCCCCCCCCCCAAACNCTTACTNTN
AACTGTGGCCTGTCACGGGGATGTACCCTTAATTTCAGTGATGAGCAGGA
ATAACCTAACTGGCAAAGGCTTCATCAGAAGACTCCATATTTATTTGCGC
CTGAGCCAGCCACAGAGATGCTGGACAGTTGTGTGGGGTATGATAAAACT
AGAAGGCCTGTTATAGTGCCTGCCCAATATGTAAGCCAATGAAAATACTG
GGCTTGATTCCTACCACCCTGCCCTTGTTGTGTCGCCTCCCAATTTGTTA
CCCGAATAACCTCAACCCCGAGTAATTCCAAACTAATTTACTCCTTTATT
GT
CGATGATNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACACAGAGAA
ACCCTGTCTTGAAAAACAAAAACAAGGNCTGGTGAGATGGCTCANTGGNT
AAGAGCACCTGACTGCTCTTCTGAAGGTCCAGAGTTCAAATCCCAGCAAC
CACCATGTGNNGNCTCACAACCACGCAAANAAAATCTGACGCTTTCTTCT
GNNGTGTCTGAANACAGCTACAGGGNACTTACATGTAATAAATAAATAAG
AAGAGGGANACCCTTTTAAAAAAATTTTTTTCCTGNNNNNAGGGGGGAGG
AACCTTTNAANAAATTGNNTTTTNGTTCCTGAACAANACCCCCCCNNATT
TTTTAGTATNTAAGGTGGGGGGGGGCCCCCCCCTTAACCCCACNNCACAA
AAGGGGGGGGGCCGCGGGCCCGCTTTCTCCTCTGCTTTCGGAGCCTGGAN
NNNNNNAANNNAAAAAAANANNAAAAATNGGGGTTTTCTTCTTTGGGTGG
NNCCCCTNNNNANAAAANNNNTTCTGCTCGATCCTTTCCCCNCNCCTTNN
NNNNNNNNNNNNNNCNNNNNCCTCNNNNNAACNCCCCCANCNNCNCCCCC
ACCAAACACANACCCCCCCCCCCCCACCTCCCCCTTTTTTTTTTTGGTTT
TTCTTTTTTTTTTGCTCCAANAANTTGGANNNNNNCCTNCNNNNNNNCTA
GNNNCCNCTCNNNNTTANNNNCNTGCNNTTACNGCTTTCTTTTGTTNNNC
NNNNNNCNGGGCCGTTTGTCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_b24.b1 MSMg01no311_b24.b1 CHROMAT_FILE:
MSMg01no311_b24.b1 PHD_FILE: MSMg01no311_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:53 2005
         (320 letters)



>mm_chr15_99447234_99447953
          Length = 720

 Score =  594 bits (307), Expect = e-174
 Identities = 313/315 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcccaagttctaatcccaggtcaactatagtttgtggacatttgggtcaaatcat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcccaagttctaatcccaggtcaactatagtttgtggacatttgggtcaaatcat 263

                                                                       
Query: 64  ctcactgaatttaccaactgggacacacccacccatccttctggcctctgagggcacggt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctcactgaatttaccaactgggacacacccacccatccttctggcctctgagggcacggt 323

                                                                       
Query: 124 gagggcaagtaataacacttgaatagactaaatcactatgtaagtgtcctagaggcttgg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gagggcaagtaataacacttgaatagactaaatcactatgtaagtgtcctagaggcttgg 383

                                                                       
Query: 184 agaggtggctcagcagttgagagcactggctgctggtgcagaggaccagggttccactca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agaggtggctcagcagttgagagcactggctgctggtgcagaggaccagggttccactca 443

                                                                       
Query: 244 cagcatacacccggtgacaagaggcatctgcgatcacatttgtaggggatccggcatctt 303
           |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 444 cagcatacacccggtgacaagaggcatctgcgatcacagttgcaggggatccggcatctt 503

                          
Query: 304 cttcatgggcactga 318
           |||||||||||||||
Sbjct: 504 cttcatgggcactga 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)