BAC Information

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BAC

Clone NameMSMg01-311G24
Chromosome15 (Build37)
Map Location 49,659,159 - 49,659,459
singlet/doubletsinglet
Overlap geneLOC665160
Upstream geneEG665146, LOC100039600, LOC100039539
Downstream geneTrps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311G24.T7 (MSMg01no311_g24.b1)MSMg01-311G24.TJ (MSMg01no311_g24.g1)
ACCAG433940AG433941
length721723
length of high quality
(start - end)
672 (46 - 717)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no311_g24.b1 PHD_FILE: MSMg01no311_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:17 2005CHROMAT_FILE: MSMg01no311_g24.g1 PHD_FILE: MSMg01no311_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCCCATATGCACCCACCAAACCCAGTCACTATTGCTGATACCAA
AAAGTGCTTGCTGACAGGAGCCTGATATGAATGTCTCCTGAGAGGCTCTG
CCAGAGCCTTACCTATAGAGATGCATATGCTTGCAGCAACCATCTAACTG
AGGACCAAGACCACAATGGAGGAGTTAGGTGAAGGACTGAAGGAGCTGAA
GGGGTTTGCAACCCTATAGGGAAAACAACAATATCAACTAACCGGACCCT
CCCTCCCCCAGAGTTCCCAGGGACTAAACCACAAACCAAAGAGCAAGAAT
GGTGGGACCCATGGCTCCAGGTGCATATGTAGCAGAGGCTGGCCCTATCT
GGCATCAATGGGAGGGGAGGCCCTTGGTCCTGTGAAGACTTGATGCCCTG
TCGTAGGAGAATACAAGGTCGGTAAGGCAGGAATGAGTGGGTGGTTGGGA
GAGCACCTTTATAGAAGCAGGGGAGAGAGGTAGAATAGGTGGCTCTTGGA
GGGGGGAAAAGGAAGGAGGATAACATTTGAAATGTAAATAAATAAATAAC
CAATAAAAAAATTAAAAAAAGAAAGAAACCTTGGAAATATTCTGTAGCCA
AAGCATGAGTGCAAAGAGACATTCTTTTCTCTCTAATCAGCTACAACTAT
CCAAACTGACAGCTCCTAGTA
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAAGA
ACACTCCTCCATTGTTGGTGGGATTGCAGTCTTGTACAACCACTCTGGAA
ATCAGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGTTTATTATCCACACCACGCCCCAACTGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCACCCATAATTAATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
AGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTACTAGCCAAATGGATGGACCTGGAAGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGATATTAGCCCAAATCCTAGGATACCCAAGATATAAGATACAATTTC
CTAAACACATGAAACTCAAGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_g24.b1 MSMg01no311_g24.b1 CHROMAT_FILE:
MSMg01no311_g24.b1 PHD_FILE: MSMg01no311_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:17 2005
         (672 letters)



>mm_chr15_49658390_49659461
          Length = 1072

 Score =  561 bits (290), Expect = e-164
 Identities = 299/302 (99%), Gaps = 1/302 (0%)
 Strand = Plus / Minus

                                                                        
Query: 371  ggaggcccttggtcctgtgaagacttgatgccctgtcgtaggagaatacaaggtcggtaa 430
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1070 ggaggcccttggtcctgtgaagacttgatgccctgtcgtaggagaatacaaggtcggtaa 1011

                                                                        
Query: 431  ggcaggaatgagtgggtggttgggagagcacctttatagaagcaggggagagaggtagaa 490
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1010 ggcaggaatgagtgggtggttgagagagcacctttatagaagcaggggagagaggtagaa 951

                                                                        
Query: 491  taggtggctcttggaggggggaaaaggaaggaggataacatttgaaatgtaaataaataa 550
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 950  taggtggctcttggagggggaaaaaggaaggaggataacatttgaaatgtaaataaataa 891

                                                                        
Query: 551  ataaccaataaaaaaattaaaaaaagaaagaaaccttggaaatattctgtagccaaagca 610
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 890  ataaccaataaaaaaatt-aaaaaagaaagaaaccttggaaatattctgtagccaaagca 832

                                                                        
Query: 611  tgagtgcaaagagacattcttttctctctaatcagctacaactatccaaactgacagctc 670
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831  tgagtgcaaagagacattcttttctctctaatcagctacaactatccaaactgacagctc 772

              
Query: 671  ct 672
            ||
Sbjct: 771  ct 770


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space:   703044
Effective search space used:   703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)