Query= MSMg01no311_h20.b1 MSMg01no311_h20.b1 CHROMAT_FILE:
MSMg01no311_h20.b1 PHD_FILE: MSMg01no311_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:21 2005
(278 letters)
>mm_chr15_13002460_13003137
Length = 678
Score = 516 bits (267), Expect = e-151
Identities = 273/275 (99%)
Strand = Plus / Minus
Query: 4 ggaattcttcatattcttcataaacacagttcaaggaagaaatcagacaggagcactaag 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ggaattcttcatattcttcataaacacagttcaaggaagaaatcagacaggagcactaag 297
Query: 64 atttaatgactgtcattccatgtgccagagacattgttcatcaccaatatccaatctaag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 atttaatgactgtcattccatgtgccagagacattgttcatcaccaatatccaatctaag 237
Query: 124 gtgaccttgcaacattcactcaatcgttgtttgcaactattacttattaaggatgtctca 183
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 236 gtgaccttgcaacattcactcaatcattgtttgcaaccattacttattaaggatgtctca 177
Query: 184 ggtgccaggatgctgggtcttgagtctactgaagtaaaggaaccagaccaatttcatgcc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 ggtgccaggatgctgggtcttgagtctactgaagtaaaggaaccagaccaatttcatgcc 117
Query: 244 ttcttccatgatgtgatctacttaagaacacggct 278
|||||||||||||||||||||||||||||||||||
Sbjct: 116 ttcttccatgatgtgatctacttaagaacacggct 82
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space: 179961
Effective search space used: 179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no311_h20.g1 MSMg01no311_h20.g1 CHROMAT_FILE:
MSMg01no311_h20.g1 PHD_FILE: MSMg01no311_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:21 2005
(290 letters)
>mm_chr15_12819654_12820343
Length = 690
Score = 538 bits (278), Expect = e-157
Identities = 287/290 (98%), Gaps = 2/290 (0%)
Strand = Plus / Plus
Query: 1 tttgtctaactgtggaattcgacaacccaaatatggagacagaaaagttcatcacatgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtctaactgtggaattcgacaacccaaatatggagacagaaaagttcatcacatgca 260
Query: 61 catgcggaaaaaaggtgtgtttgggtgacagtaagaccctcctgtctgctctgtgctgct 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 catgcggaaaaaaggtgtgtttgggtgacagtaagacgctcctgtctgctctgtgctgct 320
Query: 121 tccgaaggcccagagccacccgtccttgggctgatcccctggtggctctgtgaacccctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccgaaggcccagagccacccgtccttgggctgatcccctggtggctctgtgaacccctc 380
Query: 181 cctctgcgcctcatgcatcctgggtaacagtcactttgggtgcggaaaatgttcttactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctctgcgcctcatgcatcctgggtaacagtcactttgggtgcggaaaatgttcttactt 440
Query: 241 cagtcacatatttt-atataatggaatgcagatgacaaactttttaaagt 289
|||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 441 cagtcacatattttga-ataatggaatgcagatgacaaactttttaaagt 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
