BAC Information

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BAC

Clone NameMSMg01-311J24
Chromosome15 (Build37)
Map Location 22,218,870 - 22,219,186
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh12, LOC100040351
Downstream geneEG545091, Cdh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311J24.T7 (MSMg01no311_j24.b1)MSMg01-311J24.TJ (MSMg01no311_j24.g1)
ACCAG434075AG434076
length7291,838
length of high quality
(start - end)		323 (50 - 372)---
definitionCHROMAT_FILE: MSMg01no311_j24.b1 PHD_FILE: MSMg01no311_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:31 2005CHROMAT_FILE: MSMg01no311_j24.g1 PHD_FILE: MSMg01no311_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAGAAGAGGAATTTATCTATGAATTTCAATGATTTTTTCCT
CTCTTTGAGAAAGTACTGATTATTAAGTTGAAGATATGATAAATGTAGTG
AGTACATAGTTGTGTTTGTATTCACTTGCTTAGCAGAATACTGCAAACTG
TATATCTTGAAACAGCTATTTTCCAATCTTATGGATTGTCATATGCCAAC
CATCAAATTATAAGCAAAACAGTTTGGACTGAGGATCATTTTCTTCATGT
ATAGATTGCAAAATTCTTCAAGTTTGCTAAACTGGTCATTTATCCTTTTG
TACAATACCCAAATGGCCTCCACTTTTGTCNTTGCCATACCCCATTAGGG
TTTATCATAANAATGGCAATTTTACCCCCCACAANNNCAAACAAAATTTC
GGGGGGGGAGGGGTTAAACATAACTATTCCGATTANATCAAAACAAATTC
ATCCGATGTGATTCCTTTCTATCTCTACTTCTATTTTCTCCTTCCATCTT
TTGTTGGGTCGATGTATTGCTCCTTGTATGTGCATATGTACATGCCCATT
TTCTGTAGGACAGGTATTCTCTTAATGGCCACATTTCTGAATAAAACCTT
ATTTCCTGCCCACCCCAGCTTCCTTTCCATAGAGTTTTTCACAATGGCTG
TAAGAAAGTCTTTGACCCCTTCCTTCCTC

TGCTATACCACTTATCCCATTTAANNNACTTCCCCAGCATCATCTCTCAC
CTTTCGATTACCCNTNCTGCGGCGNNGNGGCCGCCNTCCCTGATACTCAT
TCTCAATCTGGACAACGCAATCGGAACAGCGCTACCGCTATTACCCCNNN
NCNNNNNNNNNNNNNNNGGCGGCGATGNTTNCTCACGCAAGGGCGACATA
CCGCCGCCGACACACACACCCACTCCCTGCAATCGCAATCACCTCCGTAA
CCCGCGCCCTCTCACCGCGCGCGCACGAGCGGAGCACGACGCACAACGCT
TTTATAATGCCATTCATCTGCGACACGCAATGCACCATGCGTGAGCTATT
ATGAAGCGACCTCGAGACATGAAGATGCCCTCTCCTTAACATATATTTTC
TATTCCAGTCTACCTCTTATGCCATATCCCGAACAGCGGCGTACGCCACA
CGACGTCTATGAGCGACTAGCGAGATAGGGACGAGGAGGACGAGTAATAG
ATCGCCAATACGCGTCTTCATCCTTCTAACGCCCGCGTCTATCGCACATA
CATCCTCACGTACAAGNACTAAGTGAAGCTCAGCGCCATTAGATACGCCA
TGCCACACTATACATCAAGCGTGTACACGCTTCGACAGAGCTACGAGAGT
TGTTCATATTAATACGGCGTACGCATCCTGAGCGCTATATNATATNTCTC
GTTACACGACGAGGTGAACTATGTGCGCGGCGACCGAGCGATCGATAGAC
ACGTGTATTGTTGTGTCTCTCGTACTGTCCGACGGAGTCCTGTGCCCGAT
CATGTATTTGATGATCCCGAAGACGCAGCACGCAGCTGTTCGAGAGGACT
ATAGAGCTCTTCTATCTGTATTTCTTATTAGCGGAGACGACGCGGACTGC
ACTGCGAACGCGTACAACGCACGCGCGGTAGAATGAGCCAGTATATGCGT
CAGTGACGGTAGCGGTGGTCGCACATATGATCCGGTACAGCATGATTAGA
GTCTCNCCATGACGCATCTCCAACTATATAAGATATAACAACAGTATATA
TGATTCACCTCCATATAGCTGGTCTGGTGCGCTGACGCGCCGTGCCGCGC
GATATATACATGAATCAGCGCGACCGCGCACGATACTGTGCAGCGCTCGC
GGTATATGCGTACACCACTGAGTACTCGGTAGATACGACCACGCGCTATG
ATGTACACACAAGCACGTACTGCAGACGCGCGCGCTTAGATTCACGACAC
CATAGNAACGCGGCGNTGGCAGTTAATCTCTATCGCACTATACAGATACG
TCGACACACGCCTGTTCTCGATGCGCTAGGCGATCGACCGCGCGACCGNT
GTCTGAACACGCGCCTGATGAGCGTGGCGAAGCTCGATATACGTACGCGA
CAGCACTGTCGATCAAATCATTATANTGATCGCAGCACGACTGAGACTAT
CGCAGCGAGCTGTACGTGAGTTCTANCACTGTGTTGTAGCTCGACACCCG
TGCTCTACGATCATGAGCCGCTGCACTCCGCGCTACANCATATGCACACA
TGTGCTCGTAGCACACGCGTCACGCGCGTACNTATCTACACACGCTGAGA
TAGGACACCTATGCTCGACGACACTGTCGTATGTGTTGATGTTGATCACG
ATCTAATGTACGGACGCTGCACGCCGTGATACTGTTGTAGTACACACAGC
ATATGTACACAGCATAGATGCTATGACATAGAGTCTATGATGCAGACCAC
GTCANTGATCACGCNTCACCGNCGNGATANGATTACGCGAAGATGATTTG
AGANTGACGCGTGAAGTCCTTATGATTAATNCANCAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_j24.b1 MSMg01no311_j24.b1 CHROMAT_FILE:
MSMg01no311_j24.b1 PHD_FILE: MSMg01no311_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:31 2005
         (323 letters)



>mm_chr15_22218666_22219388
          Length = 723

 Score =  598 bits (309), Expect = e-175
 Identities = 315/317 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagaagaggaatttatctatgaatttcaatgattttttcctctctttgagaaag 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagaagaggaacttatctatgaatttcaatgattttttcctctctttgagaaag 264

                                                                       
Query: 65  tactgattattaagttgaagatatgataaatgtagtgagtacatagttgtgtttgtattc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tactgattattaagttgaagatatgataaatgtagtgagtacatagttgtgtttgtattc 324

                                                                       
Query: 125 acttgcttagcagaatactgcaaactgtatatcttgaaacagctattttccaatcttatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acttgcttagcagaatactgcaaactgtatatcttgaaacagctattttccaatcttatg 384

                                                                       
Query: 185 gattgtcatatgccaaccatcaaattataagcaaaacagtttggactgaggatcattttc 244
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 385 gattgtcatatgccaaccatcaaattataagcaaaactgtttggactgaggatcattttc 444

                                                                       
Query: 245 ttcatgtatagattgcaaaattcttcaagtttgctaaactggtcatttatccttttgtac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttcatgtatagattgcaaaattcttcaagtttgctaaactggtcatttatccttttgtac 504

                            
Query: 305 aatacccaaatggcctc 321
           |||||||||||||||||
Sbjct: 505 aatacccaaatggcctc 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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