Query= MSMg01no311_m13.b1 MSMg01no311_m13.b1 CHROMAT_FILE:
MSMg01no311_m13.b1 PHD_FILE: MSMg01no311_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:44 2005
(319 letters)
>mm_chr15_15567562_15568280
Length = 719
Score = 526 bits (272), Expect = e-154
Identities = 305/322 (94%), Gaps = 10/322 (3%)
Strand = Plus / Minus
Query: 5 gaattcccttattctgccatctttacagaatattgttctttgaagcctcactaaaatatg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gaattcccttattctgccatctttacagaatattgttctttgaagcctcactaaaatatg 264
Query: 65 ttccatgtataaacacataggtcattttgcagacttggatgtttagcaagactttt---- 120
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 263 ttccatgtagaaacacataggtcattttgcagacttgggtgtttagcaagacttttcctg 204
Query: 121 ------cctttttgtatccaaaaaaccatattttttactgtgtgcatttgtacctggctt 174
|||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 203 agataccctttttgtatccaaaaaaccatattttttaccatgtgcatttgtacctggctt 144
Query: 175 ttagtggatccatcccatgaaaattattaatatgtaactaattgatgcagtggtttttcc 234
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 143 ttagtggatctatcccatgaaaattattaatatgtaactaattgatgcagtggtttgtcc 84
Query: 235 tcaatatctcacagtttctataagttagcatatgcaagtgctacttatgaaattgcaaac 294
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 tcaatatctcacagcttctataagttagcatatgcaagtgctacttatgaaattgcaaac 24
Query: 295 ctctgcattgagacataaccag 316
||||||||||||||||||||||
Sbjct: 23 ctctgcattgagacataaccag 2
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space: 220100
Effective search space used: 220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no311_m13.g1 MSMg01no311_m13.g1 CHROMAT_FILE:
MSMg01no311_m13.g1 PHD_FILE: MSMg01no311_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:44 2005
(293 letters)
>mm_chr15_15489145_15489837
Length = 693
Score = 543 bits (281), Expect = e-159
Identities = 290/293 (98%)
Strand = Plus / Plus
Query: 1 aagacaactgcagtagagtggagaggacctgatttaagaactgccactgcttttgaggag 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 aagacaactgcagtagagtggagaggacctgatttaagaactgccactgtttttgaggag 260
Query: 61 aaacagtgtgtaactcaattgcttaagaaaatcaaggctgtgacaatagcaaagatcacc 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaccagtgtgtaactcaattgcttaagaaaatcaaggctgtgacaatagcaaagatcacc 320
Query: 121 gttgtcctgtgacttagtgccactgcggcactctgcactgcatacactgcaccttaggaa 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 gttgtcctgtgacttagtgccactgtggcactctgcactgcatacactgcaccttaggaa 380
Query: 181 aattacgattctaaaagaaatggattttgcaagattttaagccatttacatagatgtctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattacgattctaaaagaaatggattttgcaagattttaagccatttacatagatgtctg 440
Query: 241 aaatgtttacttcaatagtattttttaaaattcactatgctacttaatgtcta 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatgtttacttcaatagtattttttaaaattcactatgctacttaatgtcta 493
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space: 194256
Effective search space used: 194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
