BAC Information

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BAC

Clone NameMSMg01-311P19
Chromosome15 (Build37)
Map Location 64,889,237 - 64,889,552
singlet/doubletsinglet
Overlap genenone
Upstream gene0910001A06Rik, Ddef1, Adcy8, LOC268812
Downstream geneLOC100040790, LOC665836, C920006C10Rik, Oc90, F930104E18Rik, LOC100040835, Kcnq3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311P19.T7 (MSMg01no311_p19.b1)MSMg01-311P19.TJ (MSMg01no311_p19.g1)
ACCAG434331AG434332
length722746
length of high quality
(start - end)
320 (45 - 364)289 (80 - 368)
definitionCHROMAT_FILE: MSMg01no311_p19.b1 PHD_FILE: MSMg01no311_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:58 2005CHROMAT_FILE: MSMg01no311_p19.g1 PHD_FILE: MSMg01no311_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAACATAGTCTATAACAATTATTCATTTGGTAATTTTTCTGCATGTT
TTGTAAAACATGAATGTATCTTTACTTACTTCCCACCACAGTCTTTTCTT
TATTTTAATATTTTTGAACTACCTGAATAAATGTGAACTCCCCAAAACCT
TTCTTAGGAAAGCAGAACTCAAATTGAAAAGGTTGATCAAAGTCCCCTCT
TCTAAGATTATGGAAATTAATCAGAAATGGGTCTCTTTAGAAACATTTTT
ATTGTAATAGGGAGAACACGAGGTTGGATCAATGGCTCAACATTTGAGAG
AGTAGTCTGCTACCTTTGAGGACCTGCACCCTGGCTCCCAGTATTCATCC
TGAGTGGCACACAACCACTGCCCCACTCTAATACCAAAGAATTCGATATG
TCTGTGAGTCCACGGACACTCACAAACATATTTACAAACCCACACAGAGA
CATGTACGCATGCACACTGTTCAAAATAAAAAATACACCTTTAAAAATTA
NAGAAAAGTTGCAATAGACTTCAGTTAAAACCAATGAAAATGTACTCTTC
TTGATGCTTCTTTTTCTGCTTCTCATCTTCAAAGTCTGATGCATCCAGCC
CCCATTGCCTAGAAGAATGTCTGAACTCCGAGAAAATGTCACCTATTTTC
ATAGCACTTTATTACAGGGCAA
NATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGGGATTCTTGTGGAAGAGTT
GGGAAAAAGGATAGAGGAAGCCAGAGGGGTCAAGGACACCACAAGATCTA
CAGAGCCAACTAACCTGGGCCCATGGGACTCTCAGAGACTGAACCACCAA
CCAAAGAGCATGCAGGGTTTGAACCTTGGCTCCCTACACATTGTAGAGGA
TGTGCAGCTTGGTCTTCATGTAGAATTGGAGTGGGGGCTATCTCTAACTC
TGTTGTCTGCCATTTGATCCCCTTCCCTAATTATGTTGCCTTGTCTGTCC
TCAGTGGAAGAGGATACTTTTTTTCNTGCCCCCCCCCCCCCCCCCCACTG
TGGGTGGGTGGTNNNNTTGGCTGCCCCCCCCCACAAAAAATAAAAAAGGG
GGGGCGCCGGGGGGTCCCTTCTTTCCCTCCTCTCTCTTTCTTCTCCTTCC
TCCCTCCTCTCTCCCCACCCACTCTTCTCCCCCTACCCACCCCTCCTCCC
CTCTTCCCTTAATCTCTTCTTCCCCCACACCCACTCCTCTCCCCCTCCCT
TCACTTCCCCTCCCCCTTCTTCCCCCCTCCCCTTCTTCCTTTTTCCCCTT
CCCTCTCCTTCCCCCCTTCCTTCTCCTCCTTCTTCTCCTACCCCCCCCTC
TTTCTCCACTTTTCCATCTCCTCCACCCTCCTTCCCTCTCTCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_p19.b1 MSMg01no311_p19.b1 CHROMAT_FILE:
MSMg01no311_p19.b1 PHD_FILE: MSMg01no311_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:58 2005
         (320 letters)



>mm_chr15_64889033_64889752
          Length = 720

 Score =  549 bits (284), Expect = e-161
 Identities = 308/316 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaacatagtctataacaattattcatttggtaatttttctgcatgttttgtaaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gaattcaacatagtctataacaattattcatttggtaatttttctgcatgttttgtaaaa 461

                                                                       
Query: 65  catgaatgtatctttacttacttcccaccacagtcttttctttattttaatatttttgaa 124
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 460 catgaatgtatctttacttacttcccactacagtcttttctttattttaatatttttgaa 401

                                                                       
Query: 125 ctacctgaataaatgtgaactccccaaaacctttcttaggaaagcagaactcaaattgaa 184
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ctacctgagtaaatgtgaactccccaaaacctttcttaggaaagcagaactcaaattgaa 341

                                                                       
Query: 185 aaggttgatcaaagtcccctcttctaagattatggaaattaatcagaaatgggtctcttt 244
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 aaggttgatcaaagtactctcttctaagattatggaaattaatcagaaatgggtctcttt 281

                                                                       
Query: 245 agaaacatttttattgtaatagggagaacacgaggttggatcaatggctcaacatttgag 304
           |||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 280 agaagcatttttattataatagggaaaacacgaggttggatcaatggctcaacatttgag 221

                           
Query: 305 agagtagtctgctacc 320
           ||| ||||||||||||
Sbjct: 220 agaatagtctgctacc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)