BAC Information

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BAC

Clone NameMSMg01-312H18
Chromosome15 (Build37)
Map Location 3,448,791 - 3,449,024
singlet/doubletsinglet
Overlap geneGhr
Upstream geneLOC674207, LOC666163, EG666167, Sepp1, LOC100039139
Downstream geneLOC223278, Fbxo4, AW549877, LOC100039196, Oxct1, Plcxd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312H18.T7 (MSMg01no312_h18.b1)MSMg01-312H18.TJ (MSMg01no312_h18.g1)
ACCAG434690AG434691
length729987
length of high quality
(start - end)
234 (121 - 354)---
definitionCHROMAT_FILE: MSMg01no312_h18.b1 PHD_FILE: MSMg01no312_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:34 2005CHROMAT_FILE: MSMg01no312_h18.g1 PHD_FILE: MSMg01no312_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
GAGCCCTGACCTCATTTGATCTTGCATTAATAGCTACTTTCTGATTATTT
TCTTCCAAGTGTGCTGCCCTCACCTGTGAGCAGCCAAGAGAATTGCTTGT
CAACTCAGCCTGTCTCAGCTTTGATTTTAAGGTCTCTATGTAACTGTGGA
GCCAGACCCCTATTTCTGCCCAGTGCAGAATATCCAAAGAGGGAAAGGGG
TAACAAATAAAAGTTCCTGAGACTCTCACCAGAAAGTCTATAGCTAGCAG
TGGAGTGGTTGTTTGTTACGGAAGTCCATCACAGGCAGATGCATGAACAC
GATTTGCATTGNTTTCCAANTCGATGCCTTTTGGCCCACACATATGCTGA
GTCCTGGAAGCTTTATCAAAANGATTGACACGACTGGGGTGGGGTTTTAT
GAATGGTCAACTCCAAAAGAGGATACATTTTTCTATAAATCTATATATTC
TGTCTTCCAAAGAGGAGGTTTGTTTGTTTTAGTTTTAGTTTTGTTTTGCT
GTTGATTACCCACTTGGAAAACAGTGAATATTTTAAAAAGAAAGAAGAGG
AAGGGGTCTGGAGGATTGTTTCAGCCGTTAACAGCCCTTGCTGTTTCTTT
CAGAGGATTAGAGTTTTGTTCTAGTGCCCACATCTGATCACAAACTAATA
CCCTCCACCTCCAGGGATACAATACCCTC
CATGAGTGGATAGGCCATGTGCGTGCCGCACTGGGCCTGTTCGACATCTT
CACGGTGATCACTACTCAGATAGGATACCTGCGCGAATATCAACTGCGCC
TGTCAGATATTACTAACGACCGTCAGACGTGGAAACAAACACCATGTTTG
TTTACCCCCCACCTTAGATCGGCGCTGTGACAGCAACATACACACATCTT
TCAGCCACGCCTGGTCGTTATTATGCTGACAGTAAGCCTCGTCACCGTAT
CTGCCCTATCCATACACAGTTTGCGTCTAGCCTTGATATGGCGTAATTTG
GTGCTCTCGATTGCTGCCATTTCGTCTCTCTTACGACATCTCGTCGCCGG
TATCTCCTCATCCGATATATCGGTCGCATTTCTCAGCAATTACTCTGACT
CTCGATGCCTGTTTTATCTTCCGTTCCGCTCCCGCACACCCAGCCGCCAA
CAAGACTGACTTTTCCTAGTTCTCCCCCCCCCCCCCCCCCCTTGAATTTT
ATATTAAAGGAAAATGGTGATGTATCTGTCCTCCCCTTAAAATATCTATG
TAAAAAACATTGGTGGGGGGTGGGGGCTGGGTGCGATTCTTTTCATTACA
CAAAATTGTGTCCAACATCGCACAACCCCCAAATTTTTTTGTATATCCTA
CTTGATCACTGTAATATTATTTGGCATTTCTTTAACAAATTCAACCCTGG
TCACATTTATTCACATGAAAATTTGATACTACGCCAACGCTATACAATTA
TAACTTCATATTTCTCATATTTCAACACTTTTTCCTCTATCCCAGTCCCC
TGCTCCCTCGTATTAATGCCACTTTTTTTTGTTTTTACATGGTTTTCTAC
TGTGGTAATTTGCCGTGCTGACATTCACTACATAGTGGATACAAATTTCA
CTCTGCATCTTCTGATCGTCCATCACCCTCTAATCTCTTTCATAATCTTC
CGTTTTCTCCATCCTCTGCCCAACATCTCGCGTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_h18.b1 MSMg01no312_h18.b1 CHROMAT_FILE:
MSMg01no312_h18.b1 PHD_FILE: MSMg01no312_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:34 2005
         (234 letters)



>mm_chr15_3448591_3449224
          Length = 634

 Score =  437 bits (226), Expect = e-127
 Identities = 232/234 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacctgtgagcagccaagagaattgcttgtcaactcagcctgtctcagctttgattttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 434 cacctgtgagcagccaagagaattgcttgtcaactcagcctgtctcagctttggttttaa 375

                                                                       
Query: 61  ggtctctatgtaactgtggagccagacccctatttctgcccagtgcagaatatccaaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ggtctctatgtaactgtggagccagacccctatttctgcccagtgcagaatatccaaaga 315

                                                                       
Query: 121 gggaaaggggtaacaaataaaagttcctgagactctcaccagaaagtctatagctagcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gggaaaggggtaacaaataaaagttcctgagactctcaccagaaagtctatagctagcag 255

                                                                 
Query: 181 tggagtggttgtttgttacggaagtccatcacaggcagatgcatgaacacgatt 234
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tggagtggttgtttggtacggaagtccatcacaggcagatgcatgaacacgatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)