BAC Information

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BAC

Clone NameMSMg01-312N16
Chromosome15 (Build37)
Map Location 25,087,591 - 25,087,823
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666989, LOC666999, LOC100040492, LOC100040499, LOC100040529, 9230109A22Rik
Downstream gene4930445E18Rik, Basp1, EG432939, LOC100040583, Myo10, LOC100040602, Ppia-ps15_175.1, 1810015C04Rik, Zfp622
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312N16.T7 (MSMg01no312_n16.b1)MSMg01-312N16.TJ (MSMg01no312_n16.g1)
ACCAG434954AG434955
length757738
length of high quality
(start - end)
317 (38 - 354)234 (120 - 353)
definitionCHROMAT_FILE: MSMg01no312_n16.b1 PHD_FILE: MSMg01no312_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:02 2005CHROMAT_FILE: MSMg01no312_n16.g1 PHD_FILE: MSMg01no312_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
GTTTAGCTCTGTATCCCATTTTTAATTAGGTTATTTAGATTATTTGAATA
TTAATCCCTCTGTCAGATGTATGGATAGTGAAGATCTTTTTCCAATTTGT
AGGCTGCCATATTATCATAATAACAGTGTCCTTTGAAAAATTTTCAGTTT
CATGAGGTCCTACTTATAAACTCTTGACCTTAGTGCCTGAGCCATTGTGG
CTCTGTTCAGGAAGTTGTCTGTTCAAGGATATTCTCCACTTTCTGTTCTA
TTGGATTAAGTGTGTCTGTTTTTCTGTTAAGTTCTTTGATCCACTGGACT
TGTTGACTGAATTCCCACGACGNACCCCCATCTACTTGGAGATATCCAGC
TAAACCTACCCCCCCCGAAAAAAAAAAAAAACCTTTTCTATGGCGATTGT
TTTGGCTTCTATGTCTTAAATCACGTTTAAATAGGTGTGTGGGTTTATTT
CCGGTTCTTCAATATGATTCCATTGATCCACCCGTTATTTTTAACATTAA
ACTCCGTTCTTCTTTTTTTTATTACTGTTCCTCTGCAATCTATCTCATTA
TCCCGACATTATGATATCTATTGCATGCTTTTGCTTATCGATTTACTCTT
CCTTTTTTTTTCCTCCCCTATATTTTCCCTTTTTTTCCCGTATTTTGATC
TTCTTTTTTCTATTTCCCTTTATTCTACCATTTATTGTCTTTTTTTTTTC
CCTGCAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCATCCAAGGGACCAGAATTACTTCTCATTCAAGG
TTTTATGCCTTAGATCCTGTGCCCAATTTTGAGTACAAGACTGTCAGACA
TTTTTTTTTCCTCAGTATGTTTTATGCAGAAGATACTAGGGCTCCTGGAA
CACTGGAATAATTGTGGTAGGGTTCACTGAAAATTCTCCTGTGGTTTTTC
TTATACAGTCATAAAACTCAGTAACAACTTGTGGAAATAAAAAACAATGA
AGTTAAGCATTTTTTTTTTTGTAAAGACTTTTTATTTACTTACCCAGAGC
ATGTTTANGTATTTTCGNNGNGCCGNAGNNCCGAAACAAGANANNAGNNA
GGAGANCCAGACCCCCCCAAAAGCNCACCGCCAACCGGGGGGCGCCGGGC
GCGGCACACACCCCCAGGCCCCCCTCGGCCACATGACGGGGACCNAGNAC
AAAAGACGCGCGACCCGGAAAAAAAGGAGGAACCACGCGGACGCAGAAGC
ACAGGCGACCCAGGACAGACCCACGAAAAGAGAACCCATACGAAAGGCAC
AGGAAACAAACCAGAAAAAACAGAAGCACCCCAAGCCCCTGCGGCCTCTT
GTGTTTTTCCGCCCAATATTTTTGATTTGAACAATTTCTTATATACCCGG
CATTATTTATATGGCCTTTTCTGGATGATCTGGACATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_n16.g1 MSMg01no312_n16.g1 CHROMAT_FILE:
MSMg01no312_n16.g1 PHD_FILE: MSMg01no312_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:02 2005
         (234 letters)



>mm_chr15_25087391_25088023
          Length = 633

 Score =  429 bits (222), Expect = e-125
 Identities = 231/234 (98%), Gaps = 1/234 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcccaattttgagtacaagactgtcagacatttttttttcctcagtatgttttatgcag 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 433 tgcccaattttgagtacaagactgtcagaca-ttttttttcctcagtatgttttatgcag 375

                                                                       
Query: 61  aagatactagggctcctggaacactggaataattgtggtagggttcactgaaaattctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aagatactagggctcctggaacactggaataattgtggtagggttcactgaaaattctcc 315

                                                                       
Query: 121 tgtggtttttcttatacagtcataaaactcagtaacaacttgtggaaataaaaaacaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tgtggtttttcttatacagtcataaaactcagtaacaacttgtggaaataaaaaacaatg 255

                                                                 
Query: 181 aagttaagcatttttttttttgtaaagactttttatttacttacccagagcatg 234
           ||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 254 aagttaagcatttttttttctgtaaagactttttatttacttactcagagcatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 633
Length adjustment: 9
Effective length of query: 225
Effective length of database: 624
Effective search space:   140400
Effective search space used:   140400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)