BAC Information

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BAC

Clone NameMSMg01-313H10
Chromosome15 (Build37)
Map Location 5,099,935 - 5,100,281
singlet/doubletsinglet
Overlap genePrkaa1
Upstream geneOxct1, Plcxd3, C6, LOC100039214, 4930455B06Rik, C7, Card6, Rpl37, LOC100039281
Downstream geneTtc33, Ptger4, LOC100039322, LOC100039308, LOC666291, LOC666319, LOC100039358, LOC666323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313H10.T7 (MSMg01no313_h10.b1)MSMg01-313H10.TJ (MSMg01no313_h10.g1)
ACCAG435382AG435383
length1,2901,318
length of high quality
(start - end)
263 (494 - 756)377 (71 - 447)
definitionCHROMAT_FILE: MSMg01no313_h10.b1 PHD_FILE: MSMg01no313_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:11 2005CHROMAT_FILE: MSMg01no313_h10.g1 PHD_FILE: MSMg01no313_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGCGTACATTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAAAGAACTGTAAGTTGATAGAAAGGGGGAATAAGATTAGGCAAAA
GACACTGGATTGTAGAAAAAACTGCCCAATTAGATCAACCTGTGTATTTA
AAAGTTGTTTTAATGTCAAAAGTCAGAGACTTTCATAAGTCTTACACAAT
GTAAGAAGTTTTGCTTATGAAAGACTAGGGGTTCCATCAAAATTGATAAA
GATATGATCTAAGTAAGAGAAGCTTCCACCCAAAGGCACAACACAAGGAA
GGAAAAGATGAAAAAAGGGAGCAATGTAAATGACACAGAAAGTACACACA
CACACACACACACACACACACACACACACACCATTGAGGCAGCACAACAT
TTTATCTGAAGAAAGCAAGACAAACTACAATAATTTGTAAGAATACAAAT
TGTTTTTTTTTTTCCCCCCCCGNNGCTATTTGCCCATTATATAAAAAAAA
AGTGAGTGACTCCNAAAAAACTACTATAAGACTCCTACAGCTGATAAACA
CACTCAGCCAAGTGGAAATACAAAATTAACAACAACAATAATCAGTAGCC
CTCTTTTACACAAACTGGCATGAAAGAAATTAGGGAAACAACACCCTTTA
CAATAGCCCCAAATAATATAAAATATCTTGATGTCGCTCTAACCAAGCAA
GTAAAAGACATGTATGAACAGAACTTCATGACTCTGAAGAAATAAATTTG
AGAAGATATCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGTAGGG
CTAACCATAGTAAAAATGGCCATCTTACCAAAAGCAATCTACAGATTCAG
TGCATTCCCCATCAAAATTCCAACACAATTGTTTACAGAACTTGAAAGAG
CCACTCTCAACTTTATATGGAAAAGAATAAAAACCAAAATAGCTAAAAAA
ATCCGGTATATAAAAGAACTTCTGTAAGTATCACCATCCCTGACTTCCAG
TGTACTGGCAAGCAATAGTAATAAAACTTGCTTGGTATTGTTACAGAAAC
AAATAGTTCCTCCATGCAATCAATTGGAACCCAAAAATAAAACCCCCCCC
CCTCCCCCCCTTGATTTTGAAAAAAAATCCAACCCATTTAGGGAAAAAAA
AAGGTCTTTTCAAAAAAGGGGTGGCTTACAGGGGGTCCGTCCAAAAAAAA
AGAATAAATCCTCTTTTTCTCCTCTTAAAACCAAATCCGTGTGGTAAACA
CACCCCTCCACTGGGTTTTTTCCATTTATAAAAATTGGGT
NNNCCCCTCAGCGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTGCAGACAATGCTAGCCTTGAACTCTGC
AGTATATACACCTGCCTCTGACCGCTGTGATGAAAGGCATGCACCACCAT
GCCCAGCTGAGATGAAAGGCATGCATCACCATGCCCAGCTGAGATAAGGC
CTATGGTGACAGAGAAAATATTTTATGATCATCAGGGTCTAGACATCGTT
TGAAAACTTTGGAAAGCGAAGTTTGTATTACTTTGATTGATTGATTGATT
GATTGATTGATTGATTTATGAATCTGTGTGTTAGTGCCCCTTTTCTCCCC
AGGGTCTGTCACCTTAAGTCAGAGCTCACACCTTTGGCTAGTGTATTTAA
CCAGCCTGCTCTAGGGGATCAAAGCCAGTTGAAACAAGTGTAGCATTTTT
TATTCCACCCCCCCCTAACCAATGTGCGCCTTGAAAAAAAGGGGGGGCGN
ANTANTCTGCNNCGNTCCCGTTAGTCTCCTTTAGTTCTCACGGATGAACC
ATGAAGGTTTAAAATAAAAACAAATTGGAGGGAAAATGTTGCCCTTTCCA
GGGCCACGATGCTCCCAGATCAAGTGCCTTAGTGGCAGGGATGGGGAAGT
AGGAACGGCTTAGTTACTGTCCAGTCTCTCTGCAGAGACACCAAGACCTA
GGCAGCTAATAAAAGAAAGAATTTTGCCAGGCCCTACACTTGGGAGGCAG
AAGCAGGCGTATCTCTGAGTTTGAGGTCACCCCTGGTTTACAGATTGAGT
TCCAACTACGTCCGGGGCTACCCACAAAAACCCCTGCCTGAATCCCCCCC
CGCCCTGTCCCCCTTTTTTTTATTTGCAGACTTAATTCATTATTCCCTCT
TTCCTCTCCTATGGTGCATTTTTATTCACATCCACTCTCCTCTTTTGCTT
TCTCTCTCTCACTATCCTTTCTATTTCTATTCTTCTTCCTCATAATTCCA
CGTAATCTACTTCTCCCTCCACTCCTTTATCTCCTATTTCTTTCCACCTC
TCATACCCTTCACTCCCTTCTTTCATATTACATATTTCTCCTCCATCCCC
TTTATCTCTCCCTTTCTCTCGCATTTCAACCCCTTTTTCTCCTTCTCTCT
CCTTCACCCTATCTTACACTTTCTGCTCTTCTCTTACGCATTCTCCTCAT
CTTTCCTCTCACTCCTCTCTTCAACGCTCAATATCCTCACACCTCACTTC
ACTCTATTCTTCTCTCATCTATTATCTCTCTACCTCCTTATTTTCCTTTC
TTCTCTCACATCTATCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_h10.g1 MSMg01no313_h10.g1 CHROMAT_FILE:
MSMg01no313_h10.g1 PHD_FILE: MSMg01no313_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:11 2005
         (377 letters)



>mm_chr15_5099707_5100483
          Length = 777

 Score =  482 bits (249), Expect = e-140
 Identities = 330/379 (87%), Gaps = 36/379 (9%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgcagacaatgctagccttgaactctgcagtatatacacctgcctctgaccgctgtga 60
           |||||||||||||||||||||||||||||||||||||||| ||||||||||     ||  
Sbjct: 229 tctgcagacaatgctagccttgaactctgcagtatatacatctgcctctga-----gt-- 281

                                                                       
Query: 61  tgaaaggcatgcaccaccatgcccagctgagatgaaaggcatgcatcaccatgcccagct 120
                                    |||| ||| ||||||||||||||||||||||||||
Sbjct: 282 -------------------------gctgtgattaaaggcatgcatcaccatgcccagct 316

                                                                       
Query: 121 gagataaggcctatggtgacagagaaaatattttatgatcatcagggtctagacatcgtt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 317 gagataaggcctatggtgacagagaaaatattttatgatcatcagggtctagacattgtt 376

                                                                       
Query: 181 tgaaaactttggaaagcgaagtttgtattactttgattgattgattgattgattgattga 240
           |||||||||||||||||||||||||||||||||||||| ||| ||| ||| ||| ||| |
Sbjct: 377 tgaaaactttggaaagcgaagtttgtattactttgatttatttatttatttatttattta 436

                                                                       
Query: 241 ttgatttat----gaatctgtgtgttagtgccccttttctccccagggtctgtcacctta 296
           || ||||||    |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tttatttatttatgaatctgtgtgttagtgccccttttctccccagggtctgtcacctta 496

                                                                       
Query: 297 agtcagagctcacacctttggctagtgtatttaaccagcctgctctaggggatcaaagcc 356
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 497 agtcagagctcacacctttggctagtgtagctaaccagcctgctctaggggatcaaagcc 556

                              
Query: 357 agttgaaacaagtgtagca 375
           |||||||||||||||||||
Sbjct: 557 agttgaaacaagtgtagca 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)