BAC Information

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BAC

Clone NameMSMg01-313I14
Chromosome15 (Build37)
Map Location 42,306,776 - 42,307,176
singlet/doubletsinglet
Overlap geneAngpt1
Upstream geneOxr1, Abra, EG432946, LOC432947, LOC100039268, LOC100039197
Downstream geneRspo2, LOC675960, Eif3s6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313I14.T7 (MSMg01no313_i14.b1)MSMg01-313I14.TJ (MSMg01no313_i14.g1)
ACCAG435434AG435435
length1,2501,290
length of high quality
(start - end)
463 (88 - 550)377 (81 - 457)
definitionCHROMAT_FILE: MSMg01no313_i14.b1 PHD_FILE: MSMg01no313_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:20 2005CHROMAT_FILE: MSMg01no313_i14.g1 PHD_FILE: MSMg01no313_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTTTTTANNNNNNNCCAATGGGCGCTATAGACTCCTATAGGGAGAGGA
TCCGCGGAATTCTCAGTGTAATGGAGAACATGTGTTATTTAGAGTTTATC
AAATATTACAGAAGTGTAGTGTTTGAGGTGGCTCCCTGAAGGAGGTTATA
TAGGGACCTTTAGGTGAGGCAGTCAAAGACACCGGGATCAGAGGCAACAA
ACCTACCTGTATTTCAACATGCAAAAGTTTTGCTGCATTTAGAAGGCTCA
AAGACAGATGACAATTCTTGGATAGAACACTTTCCTCTAACCACCAACCA
GGGAATACACAGGGAGTACACTCATGGCTCCAGCGGCATATGTAGCAGAG
GATGGCCTTGTTGGACACCAATGGGAGGAGAGGCCCTTGGTCCTGTGAAG
GCTCAATGCCCCAGTGTAGGGGAATGTTAAGACGGGGAAGCAGGAGTGGC
TGGGTGGGTGGAGAAGCACCGTCATAGAAGCATGGGGACGAGGGATGGGA
TAGGGGGTTTTCNGAGGGAANACTAGGAAAGGGAATAACATTTGAAATGC
AAATAACGAAATTATAGAATAAATAAATAAAATAAAAACCACTTTCCTCT
GTCCTTTGTAGCACCTGTTTATGCATCTTCACTTTCTTTGAATCCTGTGA
TAAAATGCACATATTTTTACCTTCCATTTCTCCAGGTAACTTTGTAGGAC
ATTTCTGTAATTAAAGTTCTACCAAGAAGACATTGTGGTAATCTTTTTTA
AAACATGCCTAGCTTGTTTTTCTCCAACTCCTACGTCTTTTATTAATCCT
TGACTCAATTGTAGTAAACTTGATCTATTTCTGCTTTCTTCCTTTGTCAT
TCTATTATCCCTTTCTCTTTCGTTTTCCTGTCCTTGTGCACCTTTGATCA
CCTCTGTCATTGTTCCTGCTCTCTTTTGTTCCCTTACTTATTATTCCTTC
ACTCTGTCATATCCTTTGTCTTTCCATTCCATTTTCTTTCACCCTCCTCT
TTATCTTCCTCTCCTATATCTCTTCTCTCCTTCTCTTTCTATTTTTTCAT
TCCTCTTCTTTCCTCTCTATCTCCCTTTCCCTCTTTCTACATCTTCATTT
TTTTCTTTCTTCTTTTTCTTATTATTTTCTTCATTTTTTGTATCTCTTTA
CTCTTTCTCTCTTTTCTTTCTACCTTACTCTATCTTACTTACCTAAGTCA
TCATTTCTTCTCCTCCATTTTATTACTCTCCCTTTTCTATCTCCTATTTC

NCCCTTANNNNNNGGCTGAAGGNTAGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGATTTGTACCCC
ATTTTTAAACTGGATTGTTTACTTCGCTAGTGCCCAGTTTTGCTGGTGTG
CAGTCCTTTATATATTTGGAAATTAGTTCTTTGTCAGATGTGCGGTTGGT
AAGAATCCTTCCCATTTCCTAGGCTGGAATTTGATTCTATTGTCTTACAG
AAGCTTATCAGCTTCATCATATCTAATTTATTAATTGTTGGTCTCAGTGT
CTGCACTTTTCATGTTCTGTTCAAGAAGTTGTCTCCTGTGCCAATGCATT
CAAGGCTACACCCCACTTTCTCTTCCATCAGCCCCAGTGTATCTGGTTTT
ATTAATATTTCCATATCTATTACCCGTCACAAAACTCAAGTTCAAGTGGA
TCAAAATTTTTTTTTTTCCCCCCCCCCTTGCTTAAAATCTTCTCTTTAAA
AAAAGAGGGGGCNCNGAGGGCTTTCGATTGCCAGCTAAAGCTAGTGCTTA
CCCTGAGAGACAAAACACAGGGTGCAAAGCAAATTGTGAAAGGAAAGTTT
AGGTTTAGTTCTTGCTGCTCAATAGGGGATTATGCCTTAAATCTTTTTTA
TTTTATTTTTTATTGGGTATTTATTTCATTTACATTTCCAATGCTATCCC
AAAAGTCCTCCACACGCTCTCCCATCAACACGCTCTCCCACCCACTCCCC
TACCCACCCACTCCCACTTCTTGGCCCTGGCGTTCCCCTGTACTCAGNAA
ATCTTATTTGTATGCCCTTTATTACTCAGCTAATTAATTAAAAGAGGGCT
AATATTATTTTAAAGGATATGCAGCTTGTAAATATTCTATCTTGTCCCTG
AAACCATTTACTTTAGGAAGTTCAAGAAAAGCTTTGCCTAACCCTTTTCC
CCAATGATATTTATATGCCACTGGAAAAAGAACTTCTTTCAACTCTCAGA
AATGTATACATAACTGAATGGGTAAATTTTAACACAAATAAATTTACTTT
TCTTTCCCGTTTGGGTTATTTTAAAAATATTTTCCTCCTTTCTCTAAAGA
TCCAATATTCCCCCCTTATTAAAATACAGCAAACCCCTCTTGGGGTCCCT
CTTCTTTTATCCCCCTTTCCTGGAATCTATATCTTCTATATTTTGATTTC
CTCTCCCTCCTTTCCCCACACTTCTCTCTTCCAACCACACCTAATTTATA
TTTATCTCTCTCTTAATATATATATCTCTCCTAACTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_i14.b1 MSMg01no313_i14.b1 CHROMAT_FILE:
MSMg01no313_i14.b1 PHD_FILE: MSMg01no313_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:20 2005
         (463 letters)



>mm_chr15_42306776_42307638
          Length = 863

 Score =  745 bits (385), Expect = 0.0
 Identities = 397/401 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttagagtttatcaaatattacagaagtgtagtgtttgaggtggctccctgaaggaggtt 60
           |||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||
Sbjct: 401 tttagagtttatcaaatattacagaagtgtagtgcttgaggtggctctttgaaggaggtt 342

                                                                       
Query: 61  atatagggacctttaggtgaggcagtcaaagacaccgggatcagaggcaacaaacctacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 atatagggacctttaggtgaggcagtcaaagacaccgggatcagaggcaacaaacctacc 282

                                                                       
Query: 121 tgtatttcaacatgcaaaagttttgctgcatttagaaggctcaaagacagatgacaattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tgtatttcaacatgcaaaagttttgctgcatttagaaggctcaaagacagatgacaattc 222

                                                                       
Query: 181 ttggatagaacactttcctctaaccaccaaccagggaatacacagggagtacactcatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 ttggatagaacactttcctctaaccaccaaccagggaatacacagggagtacactcatgg 162

                                                                       
Query: 241 ctccagcggcatatgtagcagaggatggccttgttggacaccaatgggaggagaggccct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 ctccagcggcatatgtagcagaggatggccttgttggacaccaatgggaggagaggccct 102

                                                                       
Query: 301 tggtcctgtgaaggctcaatgccccagtgtaggggaatgttaagacggggaagcaggagt 360
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 tggtcctgtgaaggctcgatgccccagtgtaggggaatgttaagacggggaagcaggagt 42

                                                    
Query: 361 ggctgggtgggtggagaagcaccgtcatagaagcatgggga 401
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 41  ggctgggtgggtggagaagcaccgtcatagaagcatgggga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)