BAC Information

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BAC

Clone NameMSMg01-315E03
Chromosome15 (Build37)
Map Location 59,968,910 - 59,969,249
singlet/doubletsinglet
Overlap genenone
Upstream geneEG268809, LOC665565, Sqle, E430025E21Rik, Nsmce2, Trib1, LOC665602, EG632248, LOC665613, 4933412E24Rik
Downstream geneLOC100040266, LOC623048, LOC211832, LOC623094, EG632412, LOC100040311, D330050I23Rik, 9930014A18Rik, A1bg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315E03.T7 (MSMg01no315_e03.b1)MSMg01-315E03.TJ (MSMg01no315_e03.g1)
ACCAG435952AG435953
length768717
length of high quality
(start - end)
312 (53 - 364)334 (78 - 411)
definitionCHROMAT_FILE: MSMg01no315_e03.b1 PHD_FILE: MSMg01no315_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:40 2005CHROMAT_FILE: MSMg01no315_e03.g1 PHD_FILE: MSMg01no315_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGG
CGCGGAATTCATGGAGTCTCACTAACATTGACTTCTTTTTTCTTTCTTTC
TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT
TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT
CCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTTC
TTTCTTTCCTTCTTCTTTCTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCC
TTCCTTCCTTCCTTACTTACTTACTTGCTTCCTTCATAGCAGTCTTCGTA
CCATAAGAGAATAAATTCGGGCCCCCGCACCAGGAAGTGTGAAAGGAAAG
TAAGTAGAATGTGAAAGGATGACTGTCTAGTGTATGCAAAGTAGGAGAGA
TAGAGATTGAGTGAATCCAGAATTGTCGGGGTACGACGAAAAGGAAAAGA
TCATATACCAATTATAAGCGATGGGTACATGAGGTGGAAAAAAAAAATGC
GGTATAGGTTAGTATATGATGACGAATTAAAGTGAGATTAGAAAGAGAGA
ATTAAGAAATGGAAATACAAAGTATTTATGTTATAATTGAACAAAAATTA
AAGGGGGTCAGACGAATTACCTTTATTGACTATAAAACGAGGTGAGAATT
TGAGAGATAGATAGTTGG
CCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTACAAATTACTTGCAAATGAA
GGCCATAACTTTTTCCCACACAGAGAGATCTTGTTCTTTTTCTGGCATTA
CTCAGACCTTGAGACTGACAACTTCTCTGTGTCTAGAGATACTAGGTAGC
TGTGGAGAGAGCAGAGACAACATTTCCATTCCTCATGTAAAAAAAAAAAT
CAGCTTACACTGGACACTGTTCTGATGCCAGAAATGACCCTGTCTGCTAA
ATACAGACTGCATTGTCTGAATATCACTGCTCTTTGTCTCTGAAGCTCTC
TCATTGAAGTGCTTGGACAGGTTAGAGCAGCTTGTCTGAGCTTATAGAAA
AAGGAGGAAACCCAAGCCACCCCAGTTGTAATTAATTACTTCTTTGGGGG
AAGACTTTGCCTTGTAATTATAGTATGTATCTCTAAGTATTATTTCTGAA
TGTCTTGTCTTGTATGCTCTAGTTAGAAGCCAAAATTAGATGCTAATTAT
ATTAAAACCAATCTCATTCACGTGAAGAATTCTTTCTACCCTCCATAATC
TATACCGAGATGATACAGAATATTTACTTTGCTATTACAACAGGCTAAGA
CCTGGTGAATGCATGCTGTGAACCAGGCCCCCTGCACAGCTCTTTACATG
CATTGGTTCATTTAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_e03.g1 MSMg01no315_e03.g1 CHROMAT_FILE:
MSMg01no315_e03.g1 PHD_FILE: MSMg01no315_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:40 2005
         (334 letters)



>mm_chr15_59968710_59969449
          Length = 740

 Score =  569 bits (294), Expect = e-166
 Identities = 326/340 (95%), Gaps = 6/340 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   attacaaattacttgcaaatgaaggccataactttttcccacacagagagatcttgttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 attacaaattacttgcaaatgaaggccataactttttcccacacagagagatcttgttct 481

                                                                       
Query: 61  ttttctggcattactcagaccttgagactgacaacttctctgtgtctagagatactaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ttttctggcattactcagaccttgagactgacaacttctctgtgtctagagatactaggt 421

                                                                       
Query: 121 agctgtggagagagcagagacaacatttccattcctcatgtaaaaaaaaaaa------tc 174
           |||||||||||| |||||||||||||||||||||||||||||||||||||||      ||
Sbjct: 420 agctgtggagagggcagagacaacatttccattcctcatgtaaaaaaaaaaaaaaaactc 361

                                                                       
Query: 175 agcttacactggacactgttctgatgccagaaatgaccctgtctgctaaatacagactgc 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 agcttacactggacactgttctgatgccagaaatgaccctgtctgctaaatacagactgc 301

                                                                       
Query: 235 attgtctgaatatcactgctctttgtctctgaagctctctcattgaagtgcttggacagg 294
           ||| |||||| | |||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 300 attctctgaagaacactgccctttgtctctgaagctctctcactgaagtgcttggacagg 241

                                                   
Query: 295 ttagagcagcttgtctgagcttatagaaaaaggaggaaac 334
           ||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 240 ttagagccgcttgtctgagcttagagaaaaaggaggaaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 740
Length adjustment: 9
Effective length of query: 325
Effective length of database: 731
Effective search space:   237575
Effective search space used:   237575
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)