BAC Information

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BAC

Clone NameMSMg01-315F12
Chromosome15 (Build37)
Map Location 8,296,935 - 8,297,273
singlet/doubletsinglet
Overlap geneNipbl
Upstream geneEgflam, Gdnf, Wdr70, LOC665556, LOC621001, Nup155, 2410089E03Rik, LOC100039599
Downstream geneEG666437, LOC100039560, LOC100039633, Slc1a3, EG622770, LOC268781, LOC382969, LOC100039619, Ranbp3l, 1110020G09Rik, Skp2, Lmbrd2, LOC666503, Ugt3a1, LOC100039661, Ugt3a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315F12.T7 (MSMg01no315_f12.b1)MSMg01-315F12.TJ (MSMg01no315_f12.g1)
ACCAG436015AG436016
length739718
length of high quality
(start - end)
341 (67 - 407)339 (53 - 391)
definitionCHROMAT_FILE: MSMg01no315_f12.b1 PHD_FILE: MSMg01no315_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:46 2005CHROMAT_FILE: MSMg01no315_f12.g1 PHD_FILE: MSMg01no315_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGGCACGGAGGCGCGGAATT
CCATAATTCTCAGAAATATAATTTATATAAATTTAAATGAGAATCTAAAA
AAACTGAAACATTAGAAGCCAGAAAATTTTGGTGGGAAAGGTAAAAAAAA
GGTACCATATTTAAAATACCCAATTATTTTTACTACAATATTAAGTATTT
ATTATTTAATGTTTGCATAGATTCTCTTTAGCAAGATTACCTTAATTTTA
TTTAGAATAAGGGAATTTAGTATGTTAAAGATCTTTCTAAAATAAAGTTT
TTAATGAGTCACTTGTTTACCCTTACTCTGTCATCAAATATGCAATGGCT
AATATTGATTATCAACTTGACAGGCTCTAGAATCAGCTATGAGACAAGCC
TCTGAGCATATCCCCCACGCTTTAGGTTAGCTTAGGTCAGGGATGGGTGT
GTCTTGTGTGGTTGTGTGTGTCTGTGTGTGTGTGTGTATATCTATATATA
TATGTATGCATGTGATTACCCCGACTGTTGCGCAAATTCCCCGTAACTGG
CTACTGATATACCTACTATCGTTTATTTCGTTTGTCCTCTCCCCTTCATT
CCTTATTTTTTCCTCCCCCCTTCCTCTTTGTTTTTTACCACGCGTTTCGC
CCGGTTCTCCTTCAACCTTATTCCGCCGATTTCCTCTTTTTCTCCTATAT
TGCTCATGGTCTCTCTTTATCTAACCCTTGTATTGTATC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCCGC
GAAATTCCACATAAAACCAGAGACTCAGAAACTTATAGAGGAGAAAATGT
GGAACAGCCTTGAAGATATGGGCACAGGGGAGAAATTCCTGAACAGACCA
GCAATGGCTTGTGCTGTAAGATCAACAATCGACAAATGGGACCTCATAAA
ATTGCAAAGCTTCTGTAAGGCAAAAGACATTGTCAGACAAAAAGGCCACC
AACAGATTGGGAAAGGATCTTTACCAATCCTAAATCTGATAGGGAACTAA
TATCCTATATATACCAAGAACTCAATACGATGGACTCCAGAAAATCAAAT
AACTCCACTTTAAAAATGGGGTACAGAGTTAAACAAAGAATTCTCAACTC
CCCCCCTCCCTGACTAGGTGAGAAGCACCTGAAAAAAAATCGTTCAACAT
CCTTAATCATCAGGGAAATGCAAATCCAAACAACCCTGAAATTCCACCTC
ACACCAGTCAGAATGGCTAAGATCAAAAATTCCGGCGACAGCATATGCTG
GCGAGGATGCGGATACAGAGGAACAGTCCTCCATTGCTGGTGGGATTGCA
AGCTTGTACAACCACTCTGGATATCAGTCTGGCAGCTCCTTCCAAAATTG
GAAATATTGCTACTGAAGTATCTAGCCATACCTCCCTCGGTCATATATCC
TGATAATGCTTTCACTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_f12.b1 MSMg01no315_f12.b1 CHROMAT_FILE:
MSMg01no315_f12.b1 PHD_FILE: MSMg01no315_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:46 2005
         (341 letters)



>mm_chr15_8296735_8297473
          Length = 739

 Score =  613 bits (317), Expect = e-180
 Identities = 335/343 (97%), Gaps = 6/343 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tataatttatataaatttaaatgagaatctaaaaaaactgaaacattagaagccagaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tataatttatataaatttaaatgagaatctaaaaaaactgaaacattagaagccagaaaa 260

                                                                       
Query: 61  ttttggtgggaaaggtaaaaaaaa-ggtaccatatttaaaatacccaattatttttacta 119
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttggtgggaaaggtaaaaaaaaaggtaccatatttaaaatacccaattatttttacta 320

                                                                       
Query: 120 caatattaagtatttattattt-aatgtttgcatagattctctttagcaagattacctta 178
           ||||||||    |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 caatatta----tttattattttaatgtttgcatagattctctttagcaagattacctta 376

                                                                       
Query: 179 attttatttagaataagggaatttagtatgttaaagatctttctaaaataaagtttttaa 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 attttatttagaataagggaatttagtatgttaaagatctttctaaaataaagtttttaa 436

                                                                       
Query: 239 tgagtcacttgtttacccttactctgtcatcaaatatgcaatggctaatattgattatca 298
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tgagtcacttgctgacccttactctgtcatcaaatatgcaatggctaatattgattatca 496

                                                      
Query: 299 acttgacaggctctagaatcagctatgagacaagcctctgagc 341
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 acttgacaggctctagaatcagctatgagacaagcctctgagc 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 739
Length adjustment: 9
Effective length of query: 332
Effective length of database: 730
Effective search space:   242360
Effective search space used:   242360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)