Query= MSMg01no315_m17.b1 MSMg01no315_m17.b1 CHROMAT_FILE:
MSMg01no315_m17.b1 PHD_FILE: MSMg01no315_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:23 2005
(371 letters)
>mm_chr15_63209417_63210187
Length = 771
Score = 499 bits (258), Expect = e-145
Identities = 321/366 (87%), Gaps = 39/366 (10%)
Strand = Plus / Plus
Query: 5 gaattctcacagtaaccaccagtgattgagctt-aatgaagccttaatgaagaatgctgt 63
|||||||||||||||| |||||||||||||||| || || ||||||||||||||||||||
Sbjct: 242 gaattctcacagtaactaccagtgattgagcttgaa-gaggccttaatgaagaatgctgt 300
Query: 64 agccaatctagaaaatgtacacacacacacacacacacacacacacacacacacacacac 123
||||||||||||||||||| ||||||||||||||
Sbjct: 301 agccaatctagaaaatgtatacacacacacacac-------------------------- 334
Query: 124 acacacaccacgtttataaatgtagatatgaatgtagatatttactctacttagaaaata 183
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 -----------gtttataaatgtagatatgaatgtagatatttactctacttagaaaata 383
Query: 184 tttggatagtatctgaaagaaccaattatctaagaaaactaatgtacagttgaatcaagt 243
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 384 tttggatagtatctgaaagagccaattatctaagaaaactaatttacagttgaatcaagt 443
Query: 244 tggttgaacttgtctttaacatggtgctgacaatgtttaagttctgacttcattcacaaa 303
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tggttgagcttgtctttaacatggtgctgacaatgtttaagttctgacttcattcacaaa 503
Query: 304 gtagatgatcttcaaagccagttgtttgaatctcaggctctctttctggtgttttgaagg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtagatgatcttcaaagccagttgtttgaatctcaggctctctttctggtgttttgaagg 563
Query: 364 aaagta 369
||||||
Sbjct: 564 aaagta 569
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space: 275844
Effective search space used: 275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no315_m17.g1 MSMg01no315_m17.g1 CHROMAT_FILE:
MSMg01no315_m17.g1 PHD_FILE: MSMg01no315_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:23 2005
(661 letters)
>mm_chr15_63309004_63310063
Length = 1060
Score = 1199 bits (620), Expect = 0.0
Identities = 650/660 (98%), Gaps = 1/660 (0%)
Strand = Plus / Minus
Query: 1 tcctctcaggctctgtgctgtacctgagcaactttatccagaatttgtaaagtgccatcc 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 tcctctcaggctctgtactgtacctgagcaactttatccagaatttgtaaagtgccatcc 800
Query: 61 agaggcagcagctcagaagtcttaggtcaattctcttcctttttcttcagcaattgttcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 agaggcagcagctcagaagtcttaggtcaattctcttcctttttcttcagcaattgttcc 740
Query: 121 tgagttcttcatttggtttccctgttagaatgttactctaaaacttacacaaagttgaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tgagttcttcatttggtttccctgttagaatgttactctaaaacttacacaaagttgaga 680
Query: 181 aaggtctttagggaaaaggtaagcaatgaacttgatgacattatttaccatgcaaatagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aaggtctttagggaaaaggtaagcaatgaacttgatgacattatttaccatgcaaatagc 620
Query: 241 agatttgtattcaatataaagaactattaaagaaaattaaaaacatactgacaaaatgga 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 619 agatttgtattcaatataaagaaccattaaagaaaattaaaaacatactgacaaaatgga 560
Query: 301 ggagatggtcttgggattcacagaagagggaactataatggccaacatgtaaatgaaatg 360
||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||
Sbjct: 559 ggagatggtcttgggattcacagaagagggaactatattggtcaatatgtaaatgaaatg 500
Query: 361 ttatctaatcacagttggaaaacatgagatgttgaaccatttcataacaaaatgaaaaca 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 499 ttatctaatcacagttggaaaacatgagatgttgaaccattccataacaaaatgaaaaca 440
Query: 421 tctaataatattaatgctggaaaaatgtgaagcaacaaaaacatgcatacttccaggcag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tctaataatattaatgctggaaaaatgtgaagcaacaaaaacatgcatacttccaggcag 380
Query: 481 aaattttctcagtttctccagtcatcaattttagacataaattattcaatatcatgtatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aaattttctcagtttctccagtcatcaattttagacataaattattcaatatcatgtatg 320
Query: 541 actaaggatattcacatatgataattgattgattaattatagttataagactatttcagc 600
| ||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 319 attaaggatattcacat-tgatgattgattgattaattatagttctaagactatttcagc 261
Query: 601 cacacttgttgcacatgtacaaaaatatggcacatttatatatagaacaagaaccaaaaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cacacttgttgcacatgtacaaaaatatggcacatttatatatagaacaagaaccaaaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1060
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1050
Effective search space: 683550
Effective search space used: 683550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
