Query= MSMg01no316_k15.b1 MSMg01no316_k15.b1 CHROMAT_FILE:
MSMg01no316_k15.b1 PHD_FILE: MSMg01no316_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:28 2005
(672 letters)
>mm_chr15_38622057_38623130
Length = 1074
Score = 901 bits (466), Expect = 0.0
Identities = 494/504 (98%), Gaps = 2/504 (0%)
Strand = Plus / Minus
Query: 171 ctgaagtggaagatgttcagcttcctcctgtctacaggaaacaggaactaaaactgcatc 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1074 ctgaagtggaagatgttcagcttcctcctgtctacaggaaacaggaactaaaactgcatc 1015
Query: 231 cctgccacatgtggttgccttgccttttaatcccagcacttgatgcagaggcaggcagct 290
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1014 cctgccacatgtggttgccttgccttttaatcccagcacttgaggcagaggcaggcagct 955
Query: 291 ctcttcaaggccagcctgatctacacagtgtgttccaggtcaaccagagttaagtaatga 350
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 954 ctcttcaaggccagcctgatctacacagtgcgttccaggtcaaccagagttaagtaatga 895
Query: 351 gactctgtgccaacaacaaccacagcctgcatttctaaca--tctggaatttagaattct 408
|||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 894 gactctgtgccaacgacaatcacagcctgcatttctaacatgtctggaatttagaattct 835
Query: 409 gaccagtaatttggcagcatgtgtcaaattttaatatatacactcatagagtctcttact 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 gaccagtaatttggcagcatgtgtcaaattttaatatatacactcatagagtctcttact 775
Query: 469 gggtgcatctgaagtgcagagacctatgcaaggatgtgtaaagaggccctgcagcacttt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 gggtgcatctgaagtgcagagacctatgcaaggatgtgtaaagaggccctgcagcacttt 715
Query: 529 ggacaccccgacaccagaaggcagtgacggacacttggtagaccagcatggtcaggaagg 588
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 714 ggacacctcgacaccagaaggcagtgagggacacttggtagaccagcatggtcaggaagg 655
Query: 589 tggagagccgcagccacgtggtctcagtgtgcagtatagtccttattttcttcaagaagc 648
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 654 tggagagccgcagccacgtggtctcagcgtgcagtatagtccttattttcttcaagaagc 595
Query: 649 tctaagttgagggcaagtggaggg 672
|||||||||||||| |||||||||
Sbjct: 594 tctaagttgagggcgagtggaggg 571
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1074
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1064
Effective search space: 704368
Effective search space used: 704368
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no316_k15.g1 MSMg01no316_k15.g1 CHROMAT_FILE:
MSMg01no316_k15.g1 PHD_FILE: MSMg01no316_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:28 2005
(339 letters)
>mm_chr15_38451900_38452638
Length = 739
Score = 607 bits (314), Expect = e-178
Identities = 335/344 (97%), Gaps = 5/344 (1%)
Strand = Plus / Plus
Query: 1 caggacagccaggcctacacagagaaactctgtctcgaaaaacaaaaca-ca----caaa 55
|||||||||||||||||||||||||||| |||||||||||||||||| | || ||||
Sbjct: 196 caggacagccaggcctacacagagaaaccctgtctcgaaaaacaaaaaaacaaaaacaaa 255
Query: 56 aacaaaaacaaaaacaacccaaaacaaacaaaaaaagaccctaactctcaacaatagtga 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aacaaaaacaaaaacaacccaaaacaaacaaaaaaagaccctaactctcaacaatagtga 315
Query: 116 tactcactcccaccctccccctccaaaaacccctaaacatatgtgatggtacatgcctgt 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tactcactcccaccctccccctccaaaaacccctaaacatatgtgatggtacatgcctgt 375
Query: 176 aatcctagcactgaggggagagggagtaaaaagcagaaagattgccatacattgtagaac 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aatcctagcactgaggggagagggagtaaaaagcagaaagattgccatacattgtagaac 435
Query: 236 attctagttcattctggatgatgagagtgcctcccctttcaaaagaaagaaacccaaatt 295
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 attctagttcagcctggatgatgagagtgcctcccctttcaaaagaaagaaacccaaatt 495
Query: 296 caggtggtcccctggaaatgacgaactgtagagccctttggtgt 339
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 caggtggtcccctggaaatgacgaactgtagagccctttggtgt 539
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space: 240900
Effective search space used: 240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
