BAC Information

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BAC

Clone NameMSMg01-318B17
Chromosome15 (Build37)
Map Location 73,508,297 - 73,508,582
singlet/doubletsinglet
Overlap genenone
Upstream gene1810044A24Rik, LOC665621, Peg13, LOC100041120, Chrac1, Eif2c2, Ptk2, LOC666053, LOC100040929, Dennd3, Slc45a4
Downstream geneGpr20, LOC100040946, pPtp4a3, Gm628, LOC100041273, EG625276, LOC100040966, EG666113, LOC100041307, LOC100040984, Bai1, 1700016M24Rik, Arc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318B17.T7 (MSMg01no318_b17.b1)MSMg01-318B17.TJ (MSMg01no318_b17.g1)
ACCAG437995AG437996
length764753
length of high quality
(start - end)
239 (130 - 368)346 (78 - 423)
definitionCHROMAT_FILE: MSMg01no318_b17.b1 PHD_FILE: MSMg01no318_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:13 2005CHROMAT_FILE: MSMg01no318_b17.g1 PHD_FILE: MSMg01no318_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCG
GAATTCTCTTTAAAGTTTCTTCATGATATGTATATGAGTACACTGTGGCT
GTCTTCAGACACACCAGAAGATGGCACCAGCTCTCATTATAGATGGTTGT
GAGCCACCATGTGGTTGCTTGGAATTGAACTCAGGACCTCTGGAAGAGCA
GTCGGTGCTGTTAACCACTGAGCCATCTCTCCAGTCATTTTATTTTATTT
TATTTATTATTTATTTATTTCTTTGCCAGGTGCTGTGGTACACCTTTAAT
CCCAGCACTTGGGAGGCAGTGGCAAGTGATTCTCTGAGTTCGAGGACAGC
CAGGGCTACACAGAGAATTTTTGCTCACCCCCACCCCCAACGGAAAAAAG
TTTAAAAAAAAAATTTTTTCCCCCCCCCTTACCCAAAACCAACCAACCAA
CCAAACATTTATTTTTTTTTCTTTATTTTATGTGTATGTTATGTGTGTAT
GCATGTATGTGCATCATGTGCATGCAGGGCTTGCAGAGGACAGAAGAGAA
CATTGGACTGGGGCTATTAGTTGTATGAGTTATCATACAGGTCATGGGAT
TTGAACCTGGGTCCTCTGGAAGAGCAGCTAGTGTGCTTAGCTGTTGGAGC
CATCTATCCAGCACAGTTTTAATTCCTTTAGATTTCAGTGGCCTCCTGCT
GTGACTGTGTTGGATAGAAAGTTCCAGAACATTAAAACATCTGTAATCCT
CCAGGGAGGAGCAT
NCCGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGGACTCCTGGCTCTCTACACAA
GACTCAAAGGATGAGACAGGGACAGGTGGATGGATCATCACCTTCTAGGC
TGGACATCATCCACAGCAGGCTCCCTCGGTCAGCTTGGAGGTGGAATCTC
CCTGAGCCAGAGGTAGAAGGGAGGACTTGGTACCTAGACCACGCTGCTTC
AGGGTCTTCCAGAACATTTTGTAGAATGGAGACTTGAAAGACTTGGTTGA
TTTTTGTGTTTTGTTTTGTTTTGCTTTGCTTTGCTTTGCTTTGCTTTGCT
TTGCTTTGCTTTGCTTTGCTTTGCTTTGCTTTGCTTTGCTTTGCTTTGCT
TTGCTTTGCTTTGCTTTGCCCCCACAAACCCCCCCCAGCTTTGCTTTGCT
TTGCTTTGCTTTGTTGAGACAGGGTCTCATTCTGTGTTAGATCTCAAGCC
CCAGACCTGGACAAGTAGCTATCATCCTATTCACATATCAAAACTGAAGC
TGGTCACTGATTCTCCCAGCATCCCTCAGTCCCACCTGTTACAGGGGTCT
CCTGGCTGTCATACCCCGCTCCCTTCCTTAAACTTCTCCAACCCATGGCC
TGGGCATCTCTTCCCCAACTGCCCTTCCCTATATAGTTGAGCCATTTTGG
CTATACCAGCCTCTTTACCTTATGGCTTCTTGGCCAGCGTCTTGTCCCAT
GTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_b17.g1 MSMg01no318_b17.g1 CHROMAT_FILE:
MSMg01no318_b17.g1 PHD_FILE: MSMg01no318_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:13 2005
         (346 letters)



>mm_chr15_73508154_73508899
          Length = 746

 Score =  509 bits (263), Expect = e-148
 Identities = 281/287 (97%), Gaps = 2/287 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggactcctggctctctacacaagactcaaaggatgagacagggacaggtggatggatca 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| 
Sbjct: 429 aggactcctggctctctacacaagactcaaaggatgagacagggacagatggatggatcg 370

                                                                       
Query: 61  tca-ccttctaggctggacatcatccacagcaggctccctcggtcagcttggaggtggaa 119
           ||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 369 tcacccttccaggctggacatcatccacagcaggctccctcggt-agcttggaggtggaa 311

                                                                       
Query: 120 tctccctgagccagaggtagaagggaggacttggtacctagaccacgctgcttcagggtc 179
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tctccctgagtcagaggtagaagggaggacttggtacctagaccacgctgcttcagggtc 251

                                                                       
Query: 180 ttccagaacattttgtagaatggagacttgaaagacttggttgatttttgtgttttgttt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ttccagaacattttgtagaatggagacttgaaagacttggttgatttttgtgttttgttt 191

                                                          
Query: 240 tgttttgctttgctttgctttgctttgctttgctttgctttgctttg 286
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tgttttgctttgctttgctttgctttgctttgctttgctttgctttg 144


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)