BAC Information

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BAC

Clone NameMSMg01-318D17
Chromosome15 (Build37)
Map Location 57,855,904 - 57,856,213
singlet/doubletsinglet
Overlap gene9130401M01Rik
Upstream geneBC026439, Zhx2, Derl1, Wdr67, BC030396
Downstream geneZhx1, Atad2, LOC665244, 2410187C16Rik, Fbxo32, 8230402K04Rik, Anxa13, LOC100040231, D15Ertd621e, EG631797, Tmem65, EG546638, Trmt12, Rnf139, Tatdn1, Ndufb9, Mtss1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318D17.T7 (MSMg01no318_d17.b1)MSMg01-318D17.TJ (MSMg01no318_d17.g1)
ACCAG438087AG438088
length766752
length of high quality
(start - end)
276 (439 - 714)313 (435 - 747)
definitionCHROMAT_FILE: MSMg01no318_d17.b1 PHD_FILE: MSMg01no318_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:23 2005CHROMAT_FILE: MSMg01no318_d17.g1 PHD_FILE: MSMg01no318_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGC
GGAATTCTTTGTTCAGTTCCGAGACACATTTTTTAATGGGGTTGTTTGAT
TTTCTGAAGTCCACCTTCTTGAGTTCCCTATATATGTTGGATATTAGTCC
CCTATCTGATTTAGGATAAGTAAAGATCCTTTCCCAATCTGTTGGTGGTC
TCTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTC
ATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGT
TCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCA
CTTTCTCCTCTATAAGTTTCATGTGTCTCTGGCTCCACGTGAAGTTCTTT
GATCCATTTAGATTTGACCTTACCCACCCCACACAAGAATGGATCGATTC
GCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAA
ATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAA
GTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATT
GGTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTACCACAATT
GCTCTGTAGTAAAGCTTTAGGTCCGGCATGGTGATTCCACCAGAGGTTCT
TTTATCCTTGAGAAGAGTTTTTGCTATCCTAGGTTCTTTGTTATTCCAGA
TGAATTTGCAAATTGG
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTGCGAAATCACTGGGTTAATAAGTCTTTCGCTG
GAGATTGAGCCCAGGACCTGTACATGCCAGGCAATCAGTATTCCACCGAG
CTAGCCATGGTGCTGGACTTGACACTAATGGGTGAGTGTCCGCAGTTGAG
CAGGACTTTATGTAGCTTCCCTCCTCCTCTCCTAATAGCAGTGATGGGGA
AGACAGGCAGGGCTGGAGGAGACCTAGAGAGGATGCAGCTGCCTGAGGTT
AGGGCCAGAGGTAGCATAGGCCAGCCATGATAAGTGTCCTCTCGCTCCGT
CCACCCTGTCACCTTGATGTCTACTGAGAGGTGCAGATGCCATTTTTAAG
CCTCTGCCAGCCCTTTCTGTCCCCCCCCCCCTGCGAAGATCACGGCTGAG
GATAGCAGTGGGAGACTGTGTGCTTCAGCTCTTCTGCTCCCAGTACAATG
ACCTCTGTGACCTCCAGAGAAGTTAGAGCTGTAGATTGCAATTCAATTCA
ATATTCAACATTGCAATTCAATATTTAATCTTAGGTTTGTGCATGCTAAA
ATCAGATGTGTGCCGTGTCAGTGAGCTCCATTGCTAATCCAGTGTATGGA
CCGTGGTGTTCTCCTCCCGTGATACTTTACATGTGTCCCATGTTCAGGGA
TCCCCAACATCCCCTTTCAATGTGTGGTTAAATGCACGTGTGTGTAGGTG
AG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_d17.g1 MSMg01no318_d17.g1 CHROMAT_FILE:
MSMg01no318_d17.g1 PHD_FILE: MSMg01no318_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:23 2005
         (313 letters)



>mm_chr15_57855704_57856416
          Length = 713

 Score =  576 bits (298), Expect = e-169
 Identities = 307/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaagatcacggctgaggatagcagtgggagactgtgtgcttcagctcttctgctcccagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gaagatcacggctgaggatagcagtgggagactgtgtgcttcagctcttctgctcccagt 451

                                                                       
Query: 61  acaatgacctctgtgacctccagagaagttagagctgtagattgcaattcaattcaatat 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 acaatgacctctgtggcctccagagaagttagagctgtagattgcaattcaattcaatat 391

                                                                       
Query: 121 tcaacattgcaattcaatatttaatcttaggtttgtgcatgctaaaatcagatgtgtgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tcaacattgcaattcaatatttaatcttaggtttgtgcatgctaaaatcagatgtgtgcc 331

                                                                       
Query: 181 gtgtcagtgagctccattgctaatccagtgtatggaccgtggtgttctcctcccgtgata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gtgtcagtgagctccattgctaatccagtgtatggaccgtggtgttctcctcccgtgata 271

                                                                       
Query: 241 ctttacatgtgtcccatgttcagggatccccaacatcccctttcaatgtgtggttaaatg 300
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 270 ctttacatgtgtcccatgttcagggatccccaacaccccctttcaatgtgtgggtaaatg 211

                     
Query: 301 cacgtgtgtg 310
           ||||||||||
Sbjct: 210 cacgtgtgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)