BAC Information

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BAC

Clone NameMSMg01-320H03
Chromosome15 (Build37)
Map Location 101,114,929 - 101,115,116
singlet/doubletsinglet
Overlap gene9430023L20Rik
Upstream gene4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1
Downstream gene6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320H03.T7 (MSMg01no320_h03.b1)MSMg01-320H03.TJ (MSMg01no320_h03.g1)
ACCAG439675AG439676
length7941,043
length of high quality
(start - end)
188 (187 - 374)---
definitionCHROMAT_FILE: MSMg01no320_h03.b1 PHD_FILE: MSMg01no320_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:57 2005CHROMAT_FILE: MSMg01no320_h03.g1 PHD_FILE: MSMg01no320_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GATTGTTTTTTTTANNNATTNTNAATGACCCCCCTTTTCCGTTGTATATT
TTTTTTTCAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCCGCGGAATTCTCGGTGCGGGTCCAAATAGCCTGTTTTTGCTTTTGG
TCTGTCCCCGAATACTGCGTGTTCTCGCCCCGGAAGAAGGGGACCCGAGG
CTGAGCGGCTCCTGCTCGGATTTCTACCAGCAAGGTGAGGCATGGGCGTG
TCCTGAGTCGGATAGACTTCTGCCTGATGGTTAGGGGGACCAGAGGGAAA
TGCAAATGTTGTCTCTGTGAAAAAACTGGCTGAGGCTGGAAGGAAGGGGT
GGGTCCTGGAGTAATGCTGAAACCTTTTTTTTTTGCTGGTTAGAGGGAGA
AACAGATGGAATTTTTTAGTTTTTTTCCCCGACANACCCCCCCGGGAAAA
TGAAGAAGGGAANNAGGGGNGAGNNNAAAANNNNNCAAGNNNAGGAGCCG
GCGGGTCCGGGGGCCACGAGAAAGGAACACACGGAAGAACCCGGCAAACC
GGCCAGGATAGACAGAGGGGAAAAAAGGAGCCAGANAAAAGCGACAAAAA
GAGGCTCTGCTGATAGAATAGTGAGAGGTAGAAAACACCAGGTGTGTGAA
AGGTATGAAAAAAGGTAACCCGGCTTGATGATATTATCTGTCTTTGTACT
GAATGATCTTGAATCCAGAAATGGAGAAAATAAGCCCAGATTCTAGTGAA
AGCGGAAGCAGGAAGAATTTGGTTGGCCTTCAGAAAAATAAAAG
AAACCGGAAACATATATTCCTCGCTCACATTACAATAATCAAATATACAA
CAACTATATATTAANTAAANNNNTCCCTCTAATGTCTAGTTGTGGTAAGG
CCTGGTGCGTGCCGTCCTGTTTTCCTACGCACATCTCTAGGTGTACACCT
ATAGTAATTGTATCCCGCGTGTAATTTCCCTAGAAGAAGCACCTATGTAT
GCAATCGGTCATGATCATGCGCCTGTTGTTATTTACCCCCACAATCTGCC
ATGTGATAAGTCTCGTGTGGCTCCTGTAAGGCAGCTGTGATGGTAGTTGC
ACACCAATACATGTAGTCGTCTCTCACTTTAACAAATAGCTGTTCACAGT
TGTAGTGCATGCGCGAAGGTAAAGACAGCAGACAGATCTTGTCACATATC
ACATCATCTGCTGTATCTCATCTCCACCATGTGCTTGTGTTGTGGCATGC
GATGTAAAATTGTGTTATCACATCCTTCCACTCATATTCCCTATTATTGT
TGTTACTGATGACCTAACCATGACCCAAGTTCAAGATCATGAGATTTTAN
ATAGATTTCACCGNAANACGAAAATACCCCAGATTCGTATTTTTTTTGTA
GTGATGAATTGTTATTGATCCACGGTGAAAAAAAAAAAAATAAAAAAAAA
TAAACGTCTTAGCGGTAGCTATCTCTTGTAATAATAGACCCTTATCCATT
GAACTGTTGNAATCTCCTTTGTGATGTTACACATTATATAAGGTTCTTGT
ATTATGTTTTGTCATGAATGTCGTGTTGTGGTGTATAAGTCCTGATCCCT
TCCTAAGAAAATTACTTTGTAATGTATTGTTCTCACCTACCAACCAAGCC
AGGAACTATTTATTATTCCCCTCCCATATCTCCACTATCACACAAAATTC
TCCTCCCCTTCGTTCTTTTATTTCAATCGCCCTTCTCACCCCCTCATACC
TTTTCAACATTTGCGCTCTGTCTCCGTGTGAGTTAAAAAAATATGATATA
AACTATTGCAGTCTGTAACCTCTTGCCTTATCTCCTCATTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_h03.b1 MSMg01no320_h03.b1 CHROMAT_FILE:
MSMg01no320_h03.b1 PHD_FILE: MSMg01no320_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:57 2005
         (188 letters)



>mm_chr15_101114729_101115316
          Length = 588

 Score =  325 bits (168), Expect = 1e-93
 Identities = 183/188 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggggacccgaggctgagcggctcctgctcggatttctaccagcaaggtgaggcatggg 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggggacccgaggctgagtggctcctgctcggatttctaccagcaaggtgaggcatggg 260

                                                                       
Query: 61  cgtgtcctgagtcggatagacttctgcctgatggttagggggaccagagggaaatgcaaa 120
           ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 cgtgtcctgggtcggatagacttctgcctgttggttagggggaccagagggaaatgcaaa 320

                                                                       
Query: 121 tgttgtctctgtgaaaaaactggctgaggctggaaggaaggggtgggtcctggagtaatg 180
           ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttgtctctgtgtaaaaattggctgaggctggaaggaaggggtgggtcctggagtaatg 380

                   
Query: 181 ctgaaacc 188
           ||||||||
Sbjct: 381 ctgaaacc 388


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 588
Length adjustment: 8
Effective length of query: 180
Effective length of database: 580
Effective search space:   104400
Effective search space used:   104400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)