BAC Information

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BAC

Clone NameMSMg01-320I19
Chromosome15 (Build37)
Map Location 103,211,405 - 103,211,654
singlet/doubletsinglet
Overlap genenone
Upstream geneSp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5
Downstream gene1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320I19.T7 (MSMg01no320_i19.b1)MSMg01-320I19.TJ (MSMg01no320_i19.g1)
ACCAG439753AG439754
length710669
length of high quality
(start - end)
236 (108 - 343)248 (66 - 313)
definitionCHROMAT_FILE: MSMg01no320_i19.b1 PHD_FILE: MSMg01no320_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:05 2005CHROMAT_FILE: MSMg01no320_i19.g1 PHD_FILE: MSMg01no320_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCCTATAGTTCGAAGATCCGCGGAATTCCAGGCCAGTTACCCCTACA
TAGCAAGATCTTGTTTCAAACAAAACAAAACAAACAAACAAACAATTTGC
ACGGACTACATAGATAGCTCAGCACTGAAGAACACTGGCTGCTCTTCCAG
AGTACCAGGATTGATCCCTAGCACCCATTGGTGGCTTTACAACTGTTTGT
AACTCTAATCCCAGAGGATTTGACAACCTCTGGGTTTGACTTCTGCTAGT
ACAATGGACCTGGAGTACACAGACATACACACAAAATAAAAATAACTAAT
AAAACAGAGTAATAATCTTCATGGCCTACATACTAGGGAAATGTTTTGGA
TATACCTCCCCACCTATATTATGGGGAGCAATTGAGATGGCTCAGCTTGC
TATGCAAGCCTGATGATGACCCAAGTTTGATCCCTGGATCCCACAAAAGT
GGAAAAGAGAACATTGACACTACAAGCTTGTCTTCCGACCTCTATTCCTT
GCCATGGTGTGAATACTCCACTACAGAGTATGCTCATGTGTATGTGTGCA
TGCACAAAACAACAAATGTAAATTCAACAAAGGACAACATATTCTTGTTA
TTTACCTTTATCCTTATAAAACTCTAGGACATAAAAAGGTTCAGATCTAC
TAACTGTTTATCTGTAAGAGCAGCCTGAAGGGCATGTGAACCAAGGCCCC
TTTCTCTATG
ATTCCCGAAATTCTCATCCCCTTCTTCCTTTCTTCCTCTCTGAGGGCAAA
ATAAATCATTATCCTAAACTATCTGGAACATACAGAGTGGCTGGACAGGC
CCCAAAAAGTCCTCCACTCAACTTTTCTTCCTCCTTTCTCCCAGGTATCC
CCTAACTTTAGTTCCTGGCCTGCATTCCTCCCCTGACACACCTCCTGTCA
CACATATTTGGCCCCTGTACTAACCTTTATATCATCCACACATCATTCAA
CAATAAATGTATGTTTTCGCTGGTTTAATTTGGTGATGTTGGTTTTGTTT
TTGGTTTTTGGAGTATGTATGTCTATGTGGCATGTATGCACCTGTGAGCA
TTCACATATGCCAGTGCATATACAAGTATAGAGCTGAGGTTGTTTTCAGG
AGTTTCCCCTCGAGAGCTTTTGGCCTTATATACTGAAGCAAGGCCTCTCA
TTGAACACATAGCTCAATGTTTAGTAGGCTAGGCAGCTTTCCCCAGGTAT
TATTTGTCTTTGCCTCCTAAAGGATGCTATAAGAGGGAGGCTGTCGTGTA
CACCTGAGGTCGTTATACAGCTGTTAGATAGTGGATAATGTATATCTTTT
GTACAGTTAATACTGATCTCCTGCTTTCCTCACACTTGTATCGCGCTTAA
CGGCAAATCTGAATTCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_i19.g1 MSMg01no320_i19.g1 CHROMAT_FILE:
MSMg01no320_i19.g1 PHD_FILE: MSMg01no320_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:05 2005
         (248 letters)



>mm_chr15_103211205_103211854
          Length = 650

 Score =  449 bits (232), Expect = e-131
 Identities = 245/250 (98%), Gaps = 2/250 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaactatctggaacatacagagtggctggac--aggccccaaaaagtcctccactcaact 58
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 450 aaactatctggaacatacagagtggctggacagaggccccaaaaagtcctccactcaact 391

                                                                       
Query: 59  tttcttcctcctttctcccaggtatcccctaactttagttcctggcctgcattcctcccc 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tttcttcctcctttctcccaggtatcccctaactttagttcctggcctgcattcctcccc 331

                                                                       
Query: 119 tgacacacctcctgtcacacatatttggcccctgtactaacctttatatcatccacacat 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tgacacacctcctgtcacacatatttggcccctgtactaacctttatatcatccacacat 271

                                                                       
Query: 179 cattcaacaataaatgtatgttttcgctggtttaatttggtgatgttggttttgtttttg 238
           |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 270 cattcaacaataaatgtatggtttcgttggtttaatttggtgatgttggttttgtttttg 211

                     
Query: 239 gtttttggag 248
           | ||||||||
Sbjct: 210 ggttttggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 650
Length adjustment: 9
Effective length of query: 239
Effective length of database: 641
Effective search space:   153199
Effective search space used:   153199
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)