BAC Information

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BAC

Clone NameMSMg01-321B15
Chromosome15 (Build37)
Map Location 75,348,013 - 75,348,211
singlet/doubletsinglet
Overlap genenone
Upstream geneBai1, 1700016M24Rik, Arc, Jrk, 4933427E11Rik, Psca, 4930572J05Rik, Slurp1, Lypd2, 2300005B03Rik, Lynx1, Ly6d, D730001G18Rik, Ly6k, Gml, Hemt1, Cyp11b1, Cyp11b2, 2010109I03Rik, LOC625653, Ly6e, Ly6i, LOC666240, LOC100041528, Ly6a, Ly6c, LOC546642, EG625737, LOC100041546, I830127L07Rik, LOC100041070, LOC546644, LOC100041087, BC025446, LOC100041092, Ly6f, LOC100041652, LOC100041107, 9030619P08Rik
Downstream geneLy6h, Gpihbp1, Zfp41, 2810039B14Rik, Top1mt, Rhpn1, Mafa, Zc3h3, LOC672572, Gsdmdc1, Naprt1, Eef1d, Tigd5, Pycrl, Tsta3, Zfp623, Eif2s3x-ps1, Zfp707, 2410075B13Rik, Mapk15, AA409316, K230010J24Rik, Scrib, 2410104I19Rik, Nrbp2, Eppk1, BC024139, Plec1, LOC671535, Grina, Spatc1, LOC100041269, Oplah, Exosc4, Gpaa1, Cyc1, Sharpin, Maf1, EG626280, Brp16, Tssk5, Bop1, Scx, Hsf1, Dgat1, Scrt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321B15.T7 (MSMg01no321_b15.b1)MSMg01-321B15.TJ (MSMg01no321_b15.g1)
ACCAG440161AG440162
length731735
length of high quality
(start - end)		297 (72 - 368)286 (71 - 356)
definitionCHROMAT_FILE: MSMg01no321_b15.b1 PHD_FILE: MSMg01no321_b15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:46 2005CHROMAT_FILE: MSMg01no321_b15.g1 PHD_FILE: MSMg01no321_b15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:46 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAGATAGCGCGGA
ATTCAATGTCACTTTCAAGCTTTTGTCCTGGGGAGAGCTGTAGAAGCAGT
GACACAGGAACAGATATGGCAATTGGGAGAGATAAAGGAGAGGACAGAGG
TCTGACCACACTTTTCTGCACTGTCCATCACCTAGAAGACTTGTTGGGCC
TGTGGGTGTGGAACCAGGACCCAGCCTTGTCAGTGGTTCTGGAGACATCC
AGGCAAGAGTACAGACTCACCTAGCACATTGCTGTAAAGATCAATCTCTT
TGGTCACACAGATGTTTTCCTTTGTCAGGCAGTCTACGGGATGACACATG
TTGGGCAAGGGAACTGAGAAACAGTGGAAGCAGCTCAGATTTTGGGCTAT
GAAAAAGAACACACAGACCCCCCCCCTCAAAATAGGACAGAACCCCCACG
CTATCCTTGATTCATCCCCTACAATTTCTGCCTAGTCCTTACCTTCCTTA
CCCCCTAACCTGTTGAGTATCATGTCTCGGGCAAACTCCCCAGACACCAG
CGATGCCCAGAGTACCATTAGAAGTCCCGTCGTGTCTCTTCGGAGCATTA
GCCTTGCCTGGATCCTGCATAGCCTGGTACCTTGTCCTGCCACAGCCCAT
CGCCCCCGGACTGTTGGCGTCTGGAGGATGAGGTGGAGCACTGGCTGAAG
ACTGCCGCCCCTCTCCAAGGGTTCCAGACGG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAACAAAGGTGACCT
ATAGAAGGTTCTCAGAAAATCTTTAAAAATTGGGGAGGGATGGCCTTTTG
AGTGCTCCTGCTGACTGCTGTGTGTGGAGGAATGCTTTGGTGGATGGCAT
GTATGCGAAGGTGGCACAGGACTGATAAACGAGCCTTAGTGCAGGCTATG
GCAGCCTTGGAAGCAGGAACATCCCCCAATGTTGGCTCAACATGCTGGAT
CAGTAATCAATGATGGGTAAGACCCTCACGTGTGCATACCAACCTAAAAC
AGAATGGCAAAAGTGAGTTCTTCACTCTCATGATAGGTAAGGATGTGGCA
TGGATGGTGGCAGCCTAAGACAGACGCTGATCCCAGAGCTGCTAATAAAA
CAAAAAGGGGCAGATCCCCCCCCCCCGAGTATGGCCGTAGGCCCCATGAC
ACCCACTTGCTTACTGCCTTGCCCTACCATGCGCATTATTGTTGCACGCC
TATGCTGCCTGCCAGGCTGTATTGCTCCTCTTGACCCGGATCTTGCCTCC
TACCTGTGACCGATCTGACCTCGTGTCTGTATCACGTTTGATTTCCGACT
GGAAGATGCGACCCTGCTTCCTGATCCTTTTCTTCTCTATTCCTCTCATT
TCTCTTCTTCCTCTCTTATCTTACTACTCTTACCATTTTCATTCCCCCTT
AATTTTATATAAACTCGATTCTCCTCCTATTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_b15.b1 MSMg01no321_b15.b1 CHROMAT_FILE:
MSMg01no321_b15.b1 PHD_FILE: MSMg01no321_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:46 2005
         (297 letters)



>mm_chr15_75347813_75348509
          Length = 697

 Score =  255 bits (132), Expect = 2e-72
 Identities = 183/200 (91%), Gaps = 2/200 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtcctggggagagctgtagaagcagtgacacaggaacagatatggcaattgggagag 60
           |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 399 tttgtcctggggagagttgtagaagcagtgacataggaacagatatggcaattgggagag 340

                                                                       
Query: 61  ataaaggagaggacagaggtctgaccacacttttctgcactgtccatcacctagaagact 120
           |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 339 ataaaggagaggacagagttctgaccacacttttctgcattgtccatcacctagaagact 280

                                                                       
Query: 121 tgttgggcctgtgggtgtggaaccaggacccagc-cttgtcagtggttctggagacatcc 179
           ||||||||||| |||||||| || ||||  |||| || | ||||||| ||| ||||||||
Sbjct: 279 tgttgggcctgcgggtgtgggacaaggattcagctct-gccagtggtcctgaagacatcc 221

                               
Query: 180 aggcaagagtacagactcac 199
            ||| |||| ||||||||||
Sbjct: 220 cggctagagaacagactcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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