BAC Information

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BAC

Clone NameMSMg01-321M09
Chromosome15 (Build37)
Map Location 84,922,150 - 84,922,436
singlet/doubletsinglet
Overlap geneSmc1b
Upstream geneSult4a1, Pnpla5, Pnpla3, Samm50, Parvb, Parvg, LOC382988, 1810041L15Rik, Ldoc1l, Arhgap8, 3110043J09Rik, Phf21b, LOC100043084, 4930513L16Rik, Nup50, 5031439G07Rik, LOC628135, Upk3a, 3110048E14Rik
Downstream geneRibc2, Fbln1, Atxn10, EG223745, Wnt7b, LOC100042240, Ppara, 2210021J22Rik, Pkdrej, AW124722, Gtse1, Trmu, Celsr1, BC021523
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321M09.T7 (MSMg01no321_m09.b1)MSMg01-321M09.TJ (MSMg01no321_m09.g1)
ACCAG440654AG440655
length732897
length of high quality
(start - end)
287 (69 - 355)---
definitionCHROMAT_FILE: MSMg01no321_m09.b1 PHD_FILE: MSMg01no321_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:35 2005CHROMAT_FILE: MSMg01no321_m09.g1 PHD_FILE: MSMg01no321_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGACAAGACCGCGGAATTC
TCCCATTTTCTAAAAATTGAGTCATCTCTCTTTCTCTGGCGTCTTGCACT
TCCCCCTCCTCCATCCCCCTCCCCACTTAACACCCAACAACTCATTAGTT
CTGTTAGTTTTACTTTAATATTTCTGAAATATGTAGCTCTGATCACAATA
AGGCACCATTGGGTGCTAAAAAACATTGCTACTTAATGAAAGAAGCCATA
ACTTCAATGAACTGGCACTTCAGCAACTGATAATAAATTACCTTCTTTAG
GTTATCAATATCTTCTTTGCCCTTCTGGATTGTGGTTTTTAATGTGTCGA
TATTATTCAGTTTCCCCTCCCCCTGATTTCGACTATATTCGAGCTGAATA
TTAATCCCACCCACTTGATTTTCAAACTCTAATCTAGTATAATAAAATCA
AGCATTGTAAGTGTTAAGAAGAACGCATTGTTCCTTTTATCTTTTTCAGA
TTATAACATGCTTGCGGACTTGTGGATTTATGTGTATCACATTTGCGCAT
ATATCTATTACTGTTATAGGGCTTCTGATCCCTTAATACTGGAGTTACAG
GCGCTTGTGATCTGCCCCACATGGTTGCTGGTATACATATCCGGATCCTC
TCCCATATATTTACGTGTTCCCTGGGCCTTTTCTTCATTCCCTTTCACTC
TTTATAGGATGTTCAAACATATTACCCATTTG
TGCTGTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTTCTGCGCAATTCCAGGACAGCCAGAGCTACACGTAGAATCCC
TGTCTTGTATTTATGACCCAGAGAGAGAGTTTGAGAGATAGATAGATAGA
GAGAGAGAGAGAGCGTTAGAGAGAGTGATTTTTTCTTCTTTTTTTTCCCC
CCTTTCTCCCCTTTTCTTTTCTTCCCTCTTCCCTCCCTTTTCCCTTTTTT
TTTTTCCCCCCCCCTTTTTTCCCTTTTTTTTCCCTCTCTTTTTCCTTTTC
TCCTCCCCTCCCCTCTTCTTTCTTTTTTTTTTCCTTTCTCCTCTCCTTTT
TCCTTTTCTCTTCCCTTTTTTTTTTTTTTTTCCCCCCCCCTCCCCTCTTC
TCTTCCCTTTCTTTTCTTTTCCCTTCCTTTCCCTTCTCCTCCCACCCCTC
CCCATTTCTCTCTTTCTCCTCTTTTTTTTTTCCCCTTCTTTCTTTTCCTC
CCCTTTCCTTTTTTTCTCTTTTTTTCCCTCTTTTTCTTCTTCTTTTCCCC
CCTTTTTCCTCTTTCCCTTCCCCCCCCCTCTTTTTTTTTTACCTCCCCCT
TCCTTTCTCTCTTCTTTTCTCCTCCCTTCCCTCTTCTTTTTTTCTCCTCC
CTTTTTTCTCCTTTTTCCCTTCTTTTCTTCTTTCTTTCCCCTCCTTTTCT
TTTCCTCCCTCTTTATTCTATTTCTTTTTCCTTTCTCCTCTCTCCCTCTT
TCCTCTCCCCTCCTTCTTTTCTTCTCTTCTTTTTTTTCTTTCCCTTTTCC
TTTTTCTCCCCTTTTCTTTTTTTCCCTCCTCTTTTTTTTTTTCCTCCCCT
TTCCTTTTCCTTCCCTTTCCTTTTTTCTTCCTCTTCTCCCGCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_m09.b1 MSMg01no321_m09.b1 CHROMAT_FILE:
MSMg01no321_m09.b1 PHD_FILE: MSMg01no321_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:35 2005
         (287 letters)



>mm_chr15_84921950_84922636
          Length = 687

 Score =  524 bits (271), Expect = e-153
 Identities = 283/287 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagtcatctctctttctctggcgtcttgcacttccccctcctccatccccctccccactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 gagtcatctctctttctctggcgtcttgcacttccccctcctccatctccctccccactt 260

                                                                       
Query: 61  aacacccaacaactcattagttctgttagttttactttaatatttctgaaatatgtagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacacccaacaactcattagttctgttagttttactttaatatttctgaaatatgtagct 320

                                                                       
Query: 121 ctgatcacaataaggcaccattgggtgctaaaaaacattgctacttaatgaaagaagcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgatcacaataaggcaccattgggtgctaaaaaacattgctacttaatgaaagaagcca 380

                                                                       
Query: 181 taacttcaatgaactggcacttcagcaactgataataaattaccttctttaggttatcaa 240
           ||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 381 taacttcaacgaactggcacttcagctactgataataaattaccttttttaggttatcaa 440

                                                          
Query: 241 tatcttctttgcccttctggattgtggtttttaatgtgtcgatatta 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatcttctttgcccttctggattgtggtttttaatgtgtcgatatta 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)