BAC Information

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BAC

Clone NameMSMg01-323C23
Chromosome15 (Build37)
Map Location 21,443,943 - 21,444,710
singlet/doubletsinglet
Overlap geneCdh12
Upstream geneAcot10, LOC100040302
Downstream geneLOC100040351
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323C23.T7 (MSMg01no323_c23.b1)MSMg01-323C23.TJ (MSMg01no323_c23.g1)
ACCAG441677AG441678
length1,1551,112
length of high quality
(start - end)		---769 (127 - 895)
definitionCHROMAT_FILE: MSMg01no323_c23.b1 PHD_FILE: MSMg01no323_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:27 2005CHROMAT_FILE: MSMg01no323_c23.g1 PHD_FILE: MSMg01no323_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCTGCTCNNNNNNCCTCACTGGGCGCTAACGACTCCTATANGGAGAG
GATCCGCGGAATTCTGGTAGGAAATGGGCCTTTAAAACCCACTTCTTTCC
ACTAGGCCACTTTTTAGTCCTTATATATATATACATATACATATATATAT
GAACTAAAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTTCCCTCTAACCC
CTTAACTTTATAAATCTATCCCCCCTATGTTTTCTTTATTTACTGCAAAT
GGNACCTTTTCCCTTATTCTCCCCCTTCTCCAATAACAACCAATCGTTTT
ACTCCCCCAAATTTCCTTCCTTGGTTTTTATAAATCTTTTTCCCACCCCT
TCAACCCCTTTCAAAAAAAGATTGTTTTCTTGTGTTCTTATCCCACAGTA
AATTTCCTTTTTTTCCTCCCTTGCCTCAACCAAAGAAAATTGGTTTTTCT
CTTCT

NCCACACTATNNNNNNACTCAAGTGAGNCTGGGGXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCATTAAAGTGCTTGATTCTGN
AATTTCTTACAGACAATGCTCTGTTATTTCCACTGCAATAAACATAGCTG
CTAGCTATAGTTAATTCACATTCTTTCAGTGACTATGCCATCTGAAAAAT
TATAGTTTGATTATATGTGTATTATTACAGCTGATTCTGTTTGGGAGGGG
AGACATAAGACTCTATGGCCAAAACTATAGCTTTCTTTCATTATCTTCTT
CAAGAAAACTATCACGTATAAACAAAGGAATTGATACATATATTTAAGTA
TATTCCTACATAATTAAATCAAATTATAATGCTAGTAATTGCATAAGTAC
TTATTTTATATAACTTTTAGAAAAAAACTGAATAGGTGAATTATAAAATA
CCATAATAACTGGGCAAAATGATTAGTTTAATAATCAACATATTCTTTCC
AAAAAATAGCATGTTTATAAAAAAAATAGCATTTCAAAATTCAACTGTAC
TTAGAGTTCAACTATCCTTGTATCAAAGATTTGAAGCCCTCCAGGACAAT
ATAAATCATAGGAAAATGCTAAGAGAGAGAATTATTTGTCTGGGACTAAA
GGAAGTGCTTGTCTAGCACAGAAAAGGCATTGTTTTTGGTCTCCAGTGAT
TAAAATTAAACTAAATTGAAGCAAATAAAAATAAAATAAAATGTAAATAT
TCAAGTGTTGGCAAAGCTTAAAATATTTCACTTAATATTAATAAAAAACA
AGTAATTTTCAGATATTAAAAACATGGTAATTATATTTGAGTATGATATT
AGATGATACATAGCTAATGAACATTTCATTAAGTGATTGAATTTAGACAT
TGCTCTGTTGATAATCCTCCATTGTCCCAGAGACATACTATCTAAATGTA
TATAAAGATAAAATGGCCTTTGGTTCTCTGCCCTTTTGCTATTATTTAAG
CAAGAATGCTTGCAGCTCTAAGAAACCCCTATGAAAATGTGGAAATAAAA
AAATTGTTGGGGAAAGTATTTAAAAAATTTTTCCCAAACATAAAAAATTT
TTGGGGGAAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_c23.g1 MSMg01no323_c23.g1 CHROMAT_FILE:
MSMg01no323_c23.g1 PHD_FILE: MSMg01no323_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:27 2005
         (769 letters)



>mm_chr15_21443916_21445083
          Length = 1168

 Score = 1440 bits (745), Expect = 0.0
 Identities = 763/769 (99%), Gaps = 1/769 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttccactgcaataaacatagctgctagctatagttaattcacattctttcagtgactat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 tttccactgcaataaacatagctgctagctatagttaattcacattctttcagtgactat 736

                                                                       
Query: 61  gccatctgaaaaattatagtttgattatatgtgtattattacagctgattctgtttggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gccatctgaaaaattatagtttgattatatgtgtattattacagctgattctgtttggga 676

                                                                       
Query: 121 ggggagacataagactctatggccaaaactatagctttctttcattatcttcttcaagaa 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ggggaggcataagactctatggccaaaactatagctttctttcattatcttcttcaagaa 616

                                                                       
Query: 181 aactatcacgtataaacaaaggaattgatacatatatttaagtatattcctacataatta 240
           ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 615 aactatcacgtataaacgaaggaaatgatacatatatttaagtatattcctacataatta 556

                                                                       
Query: 241 aatcaaattataatgctagtaattgcataagtacttattttatataacttttagaaaaaa 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 555 aatcaaattataatgctagtaattgcataagtacttagtttatataacttttagaaaaaa 496

                                                                       
Query: 301 actgaataggtgaattataaaataccataataactgggcaaaatgattagtttaataatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 actgaataggtgaattataaaataccataataactgggcaaaatgattagtttaataatc 436

                                                                       
Query: 361 aacatattctttccaaaaaatagcatgtttataaaaaaaatagcatttcaaaattcaact 420
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 435 aacatattctttccaaaaaatagcatgtttat-aaaaaaatagcatttcaaaattcaact 377

                                                                       
Query: 421 gtacttagagttcaactatccttgtatcaaagatttgaagccctccaggacaatataaat 480
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gtacttagaattcaactatccttgtatcaaagatttgaagccctccaggacaatataaat 317

                                                                       
Query: 481 cataggaaaatgctaagagagagaattatttgtctgggactaaaggaagtgcttgtctag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 cataggaaaatgctaagagagagaattatttgtctgggactaaaggaagtgcttgtctag 257

                                                                       
Query: 541 cacagaaaaggcattgtttttggtctccagtgattaaaattaaactaaattgaagcaaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 cacagaaaaggcattgtttttggtctccagtgattaaaattaaactaaattgaagcaaat 197

                                                                       
Query: 601 aaaaataaaataaaatgtaaatattcaagtgttggcaaagcttaaaatatttcacttaat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 aaaaataaaataaaatgtaaatattcaagtgttggcaaagcttaaaatatttcacttaat 137

                                                                       
Query: 661 attaataaaaaacaagtaattttcagatattaaaaacatggtaattatatttgagtatga 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 attaataaaaaacaagtaattttcagatattaaaaacatggtaattatatttgagtatga 77

                                                            
Query: 721 tattagatgatacatagctaatgaacatttcattaagtgattgaattta 769
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76  tattagatgatacatagctaatgaacatttcattaagtgattgaattta 28


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 769
Length of database: 1168
Length adjustment: 10
Effective length of query: 759
Effective length of database: 1158
Effective search space:   878922
Effective search space used:   878922
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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