BAC Information

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BAC

Clone NameMSMg01-323F02
Chromosome15 (Build37)
Map Location 68,659,792 - 68,660,543
singlet/doubletsinglet
Overlap genenone
Upstream geneZfat1, LOC100041000, EG665945
Downstream geneEG633752, Khdrbs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323F02.T7 (MSMg01no323_f02.b1)MSMg01-323F02.TJ (MSMg01no323_f02.g1)
ACCAG441774AG441775
length1,2881,319
length of high quality
(start - end)
752 (95 - 846)720 (144 - 863)
definitionCHROMAT_FILE: MSMg01no323_f02.b1 PHD_FILE: MSMg01no323_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:43 2005CHROMAT_FILE: MSMg01no323_f02.g1 PHD_FILE: MSMg01no323_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCGTTTTNNNNNNAACATTGGGCGCTATAXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCATCTCTCTAGAGGTGGACCATTAAAGCCCGAACTCT
ATTTCCCTTAAGCAAGCCATGAACTTAGAAAGGCCCCTATATAGCCAGCT
TCCATTGGAATGAGGTTATGAGAACATCATTACATAGTAGTCCTTCTCAT
AGTCAGGGTGAAGAAATGTATGGCAAGGCAAAGAAGGATCTGCGCAGACA
GACCCTGAGAGATTTACCGCCAGTTTTTTTGTTTTTTGTTTTTGTTTTTC
CATTATAACATGTTCCTTTGGTCCAGTCATCTCTGTGTACAACTCAGTAC
TTTTCCATAAAACGTAATATGAAGATATGACCTTCACTGGTTCTTTATTT
TATAGAGCTCCTGTATTATGAAAAAAATCTTTGCAATAATTTTCTCTTTC
TAATCTGTGTTGGTTATTGTCCTGGGAATATCAGCTATGATCGATGACTC
TAGTGATCTTATGACTCTTATAAAAGGCATGTTGAGTTTTAGTCCATACC
CAACAGTCTCTGACCAAAACATGTATGTGTATAGGTATGATACATTGATT
TGCTTAAGGATTAGTCTCAGGCTTTTCTAAAAGAAAATATGAGCACACAA
AAAAGAGTAGGTTTTGTTTTCTTTTGTTTTGTTTTTCTGTCCAACATGTC
TCACTTCAATTCTCCCAGTCACAATAACACCTATGAGTTCTATATTGTGA
ATTCCATGAGCTAAGACCCCATTCACTGAAATGCAGAAATCATGTAGGGT
TGTTAATACTCTAAACTATTATAATTATTTTGTGCCACATAAACAGACTT
TAGCACAATTAATCTAGTTAGTGGAATCATCAACTTCTTAATCATTTGCA
TATTCCCATTATGCATAACAGAAAAAGCTATTCCCGGAATCATAATGATG
GGAAAAAGAAAATTGAGGAAGGTATGTGTATGTCCCCAAAGTATCCAAAA
AAAATTTCTGGAAAACCTGGGAATTCTATAATCACCCAAGGGAAAAAATT
ACTTGTTTAAAGGGGGACCTGTTAATTTTGCTTGGAAAAGGAATAAAAGG
ACGGTCCTCAAAACAGGGGGTAATCTAAAATTTATTCTTTCTTTAATCCT
AATGTTAGGGGAGTTGGAGACTTTTATCTCTTTGAAAAAAAAAAAAAGAG
CCCCCCTTTCCAAAAAATCCTGGAGATGAAGGGGATTTTTCCTAAAGGAT
TCGAAAGGCGGGGACCCCCCCTCTCTTTTAAAAAAATT
NNNCCATTCCCCCNNNNAATGATGTGAGGCTGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTAAGCACCCATTCAT
TAAGAGGCCCCATCTTACACACACATACACACACACCCCCCCACACACAA
AATTTAAATAGATCTATAACCCTATAACACGTATGGAAATAGAAGCAGTA
ATTAAGTTTCCCAAACAAACAGTCCAGTTACAGACAATTTGAGGGCAGAA
TTCTACCAGACTTTTAAATAAGACCTAATATTAATATGCCTCAAATTATT
CCCCAAAACAGAAACAGAAAGAACATTTCCAAATTTATTTTATGAGGCTA
CAGACATCCTGACTGACATACCACACAAATATTCATCAAAGGAAGAATTA
CAGACCAATTTCCATCATGAACATTGATGCAAAAATACTCAATAAAATAC
AAACAAATGAAATCCAAGAACACATTTAAAAGAATCATCCACCATGATCA
AGTGGGCTTCTTCACCCCAGAGACTCATGGTGGTCCAACATATAAAAATC
CAGCTATGTAATTCACCATATAAATGAACTGAAAGGAAACAAAAACAAAA
ACAAAAGCACATGATCATCTCATTCGATGCTGGAAAAGCCTTTGACAAAA
TACAACATCCTTCATAGTAAAAGTCTTGGAGAGATCAGGAATATAATGGG
CATACCCAAACATAATAAAGGCAATTCACAGCAAACCGATAGCCAACATC
AAATTAAATAGAGAGAAAATCAAAGCAATTCCACTAAAATCAAGAGCAAG
AAAAGGGCTGTCCACTCTCTCCCTATCTATTCAATAGAGTACTTGAAGTT
TTAGCTAGAGCAATAAGATAACTGAAGGGAATAAAAATTGGAAAGGAAAG
CCAAATTATCACTATTTGCAGATGATATTATCCTATACATAAGTGACATC
AATAGGTCTACCAGGGACCCCCTACGCTGATAAAAACCTTCCCCAAAAAG
GCTGGGTATATGATTACCTCCCAAAAAAAAAAGGCCGGAAGTTCTCTTAA
ATTCCAAAAACAAAAAAGCTGAGAAAAAAAACAGGGAAAAAAAACCCTTT
CCAAAAGCCCCCAAGGAAATTAACTATTTTGGAAAAACCCTACCCCACCC
GGGGAAGAATGGCTGGGAAAACCTCCCAAGCCTTTTTAAAAGAAAACCAA
ATAGTCAAAAGAAGGGACAATCCCCCCGCCTCCGGCCTGGGCGGAATAAC
AAAAGAAAACCCCCTCCTTAGAAAGAATTGGGCAGGTTCAAAATCCCCCC
NAAGAAAGAGATTTTCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_f02.b1 MSMg01no323_f02.b1 CHROMAT_FILE:
MSMg01no323_f02.b1 PHD_FILE: MSMg01no323_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:43 2005
         (752 letters)



>mm_chr15_68659592_68660743
          Length = 1152

 Score = 1415 bits (732), Expect = 0.0
 Identities = 747/752 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactctatttcccttaagcaagccatgaacttagaaaggcccctatatagccagcttcca 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 aactctatttcccttaagcaagccatgaacgtagaaaggcccctatatagccagcttcca 260

                                                                       
Query: 61  ttggaatgaggttatgagaacatcattacatagtagtccttctcatagtcagggtgaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggaatgaggttatgagaacatcattacatagtagtccttctcatagtcagggtgaaga 320

                                                                       
Query: 121 aatgtatggcaaggcaaagaaggatctgcgcagacagaccctgagagatttaccgccagt 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 aatgtatggcaaggcaaagaaggatctgcgcagacagaccctaagagatttaccgccagt 380

                                                                       
Query: 181 ttttttgttttttgtttttgtttttccattataacatgttcctttggtccagtcatctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttttgttttttgtttttgtttttccattataacatgttcctttggtccagtcatctct 440

                                                                       
Query: 241 gtgtacaactcagtacttttccataaaacgtaatatgaagatatgaccttcactggttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtacaactcagtacttttccataaaacgtaatatgaagatatgaccttcactggttct 500

                                                                       
Query: 301 ttattttatagagctcctgtattatgaaaaaaatctttgcaataattttctctttctaat 360
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttattttatagagctcctgtagcatgaaaaaaatctttgcaataattttctctttctaat 560

                                                                       
Query: 361 ctgtgttggttattgtcctgggaatatcagctatgatcgatgactctagtgatcttatga 420
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgtgttggatattgtcctgggaatatcagctatgatcgatgactctagtgatcttatga 620

                                                                       
Query: 421 ctcttataaaaggcatgttgagttttagtccatacccaacagtctctgaccaaaacatgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcttataaaaggcatgttgagttttagtccatacccaacagtctctgaccaaaacatgt 680

                                                                       
Query: 481 atgtgtataggtatgatacattgatttgcttaaggattagtctcaggcttttctaaaaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgtgtataggtatgatacattgatttgcttaaggattagtctcaggcttttctaaaaga 740

                                                                       
Query: 541 aaatatgagcacacaaaaaagagtaggttttgttttcttttgttttgtttttctgtccaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaatatgagcacacaaaaaagagtaggttttgttttcttttgttttgtttttctgtccaa 800

                                                                       
Query: 601 catgtctcacttcaattctcccagtcacaataacacctatgagttctatattgtgaattc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 catgtctcacttcaattctcccagtcacaataacacctatgagttctatattgtgaattc 860

                                                                       
Query: 661 catgagctaagaccccattcactgaaatgcagaaatcatgtagggttgttaatactctaa 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 catgagctaagaccccattcactgaaatgcagaaatcatgtagggttgttaatactctaa 920

                                           
Query: 721 actattataattattttgtgccacataaacag 752
           ||||||||||||||||||||||||||||||||
Sbjct: 921 actattataattattttgtgccacataaacag 952


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 752
Length of database: 1152
Length adjustment: 10
Effective length of query: 742
Effective length of database: 1142
Effective search space:   847364
Effective search space used:   847364
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)