BAC Information

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BAC

Clone NameMSMg01-323H17
Chromosome15 (Build37)
Map Location 24,886,016 - 24,886,529
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666989, LOC666999, LOC100040492, LOC100040499
Downstream geneLOC100040529, 9230109A22Rik, 4930445E18Rik, Basp1, EG432939, LOC100040583, Myo10, LOC100040602, Ppia-ps15_175.1, 1810015C04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323H17.T7 (MSMg01no323_h17.b1)MSMg01-323H17.TJ (MSMg01no323_h17.g1)
ACCAG441892AG441893
length1,2911,298
length of high quality
(start - end)
293 (410 - 702)514 (319 - 832)
definitionCHROMAT_FILE: MSMg01no323_h17.b1 PHD_FILE: MSMg01no323_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:04 2005CHROMAT_FILE: MSMg01no323_h17.g1 PHD_FILE: MSMg01no323_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCATTCTNNNNNNNGCATTGGGCGCTAAGACTCCTATGGGAGAGGATC
CGCGGAATTAGGGGACTCCCTGCTTCCTTTATCTGCCTCTACAGCAGAAG
TTCTGTGCCCTCTGTCCTTTCTAATGTCTGGCGCACCGGTCCGTTTACGT
GTAGATTCATGTGTGTTTTGTTTCGTTGTCTGAATGACTGAATGTTCTGT
GTTTCATGTTGGATGCAACCTCTTGGTTTTTGGGCAAAAAAGCTGATAGA
TGGTTTTTTGCCTGAAGGGTTCTCTTGCAATTGTGATTAATGTGTTTAGC
AAATGACAAAGTGCTTTTTATTTTATAAGTATAGCTAGAAAAATTAAAAT
TCTCTGATTGGTCTAAGTGTAGCTGCTTCATTTGGCTTTTTACTGGACTT
AGAGATGTATTATGCTCTGCGTGTCTTCATAGTAAAGTATTAGTTATTGG
GTATGATCAAAAAGTTGCAACACTGGTTACTAGAAAGTAAGTTTTAAATT
GGCAACTCAGGAGTCTTTCAAACACGTGGTATAAAGCAGGCAAAAAAAAA
TTAGGCCTCTAAGGATACTTCTAGTTGAGATAATATTTAATGTGATTCTT
ATCCTAGAAAGTAAATTTGAAGATAAGATTTAAAGCAATATCTCTTTAAT
GAAGCATCCAAGCTTGCCCTGTCATGCATTCATAGGTATAAATTGGCAGC
CAAATCTCGCAATGTGGTGGTCAAGTTTTAATGTTGATTCTAAGGTGATC
AATTGTTTTGAAATTGGGTTTTGCTTTCCCAAAGNTGTAGTTATGGTCTA
ATATTTGTAAAGAAACTTAGTAATTCTAAAATCTGTCCTCTTGGCAAGAG
GAACCAAGTCTCAGAGCAGCTTCTGAACGGTTTGTGTGACTTTCTTTTGT
CTTCCAAACTGTGCCTAAGGAAGCTCTAGAAACTTGCCTCCAGGGGGAAA
TTTCTTTTAGCTGAAAGAACCCTATTGCAGATCTACCCAAAGTTGTTCTA
TTAAAGTTTAATTTCCAAGTTTATAAAAAGGTCCACCCGGCTGGAAAATT
TTTCAGGACTTGCCCTTTGACTTTGCCCACTCCTGTAGTTTTTTAAAATT
TAAAAAATTGTTTTTTTCTTTTGCTCCGGAAAAATGAAAAAAATTTTCTT
CTTAGGAACTGGAATCCCCGAAAAAATTTCTGTGGGGATGTTAAAAACAC
CTTTCTTTGTTTAAAAAAATTTATTTATCTTCCTCTCTTTATAAAAACAC
AAAAATACACTCTTTCCTATATGTTTCTACTGGAGAATATT
NNCCCAATCTNNNNNNNNATCATGTGAGGCTGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTAAATTCCCTTCGTGA
NCCAGAAGGAATACATGGAAAGCCTTGAAAACCCCTCCCAAACATGTTTA
AAGCTGCTCCATAATCTTAAGGCTCTTAAGTATTTTGCTACTAAATGCTT
TAGTTCAGTAAGCTCAGTTTTAAGTAACATGTTTTATAGCACTTGTTAAG
GAAAAAGGTATAATAAAAATTCTAAGACAAAGACACCCAACATTAATTTT
GATAAATAGCAATGGGATCAGAGGAGATCTTCAAAATCCTATTAAACAAT
AAATTATAGTAAGATAGTTGAGTTATAACCTTAGCAGTCTCTTTTTTATT
TTTAATATCTGATGCTTTTTTAGGGAACATGTTTTGTAAAGAATGTGAAA
ATAAAATCTTTCATGCTGTATTAGACTAAAAGAGAATTATCTGATTTCAA
GGTAAAATTCAGAACTTCTATTAACCACCATGATAGTCAAGGAAGTAAAA
GACACAAAGGTGATTTACCTGTAATCTGTTCAATGCCTTAGTGTGCTCAA
TAAAGCAAACCAAATTATTCAGTATAAATCTATTACAGCTGTGGCTGATT
GTTATCTGTATTTGAGTCTCTGTAGTATAACTTTGGGGAAACATATTCAA
AGCCCACCATCAATCATCAATCAACCTTTTAACTGANATTCATTATCTTG
TCAGGCTAGGAGACTCCGATAAAATGCCTTTGATGAATCCTAATGAATCA
TAACCTCTTTTCTAAGAAAGCAATTAGAAACACAATTTTATACCAAGTAG
ATGATAAATGTAAGGTTTACTCACTAAGTCCATTTTCCAATGTCGTTGTC
TTCTAAGTTAACATTTTAATGATTAATAAAATATACCCTCTTACTACCTA
AAATTGCCATCATTTTGCAGGCTATTACTTGAACAACCCAAGTATATTAA
TAAATGTAAAGGTTTTGGTATTTCAATTTGATTGGCAGGAAAGTGTCTAT
GAAAAAATTTGGGGAAGAGCCCCCATTAGGCCTCAACTTCCCCCTATTCT
ACCAGGGTAAATCCGGAAAAAAACTTATACCCAAATTAGGGTGTGGAAAA
AAACTTTAGGGTCTGAAACCCCTTGGTTTCCCACAAACATCCCAGGATTA
AAAAAGGGCCATTTTTTGGTACCTCTCAAAAAAAACAAATTCTGCCGGGT
TAAAAATTTTAATTCCCTAAAAGGAAAAAACACCCCCGTGTATTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_h17.g1 MSMg01no323_h17.g1 CHROMAT_FILE:
MSMg01no323_h17.g1 PHD_FILE: MSMg01no323_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:04 2005
         (514 letters)



>mm_chr15_24885816_24886729
          Length = 914

 Score =  942 bits (487), Expect = 0.0
 Identities = 507/514 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaggagatcttcaaaatcctattaaacaataaattatagtaagatagttgagttataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaggagatcttcaaaatcctattaaacaataaattatagtaagatagttgagttataa 260

                                                                       
Query: 61  ccttagcagtctcttttttatttttaatatctgatgcttttttagggaacatgttttgta 120
           |||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||
Sbjct: 261 ccttagcagtctcttttttatttttaatatctgatgcagctttagggaacatgttttgta 320

                                                                       
Query: 121 aagaatgtgaaaataaaatctttcatgctgtattagactaaaagagaattatctgatttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaatgtgaaaataaaatctttcatgctgtattagactaaaagagaattatctgatttc 380

                                                                       
Query: 181 aaggtaaaattcagaacttctattaaccaccatgatagtcaaggaagtaaaagacacaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggtaaaattcagaacttctattaaccaccatgatagtcaaggaagtaaaagacacaaa 440

                                                                       
Query: 241 ggtgatttacctgtaatctgttcaatgccttagtgtgctcaataaagcaaaccaaattat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtgatttacctgtaatctgttcaatgccttagtgtgctcaataaagcaaaccaaattat 500

                                                                       
Query: 301 tcagtataaatctattacagctgtggctgattgttatctgtatttgagtctctgtagtat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcagtataaatctattacagctgtggctgattgttatctgtatttgagtctctgtagtat 560

                                                                       
Query: 361 aactttggggaaacatattcaaagcccaccatcaatcatcaatcaaccttttaactgana 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 aactttggggaaacatattcaaagcccaccatcaatcatcaatcaaccttttaactgaaa 620

                                                                       
Query: 421 ttcattatcttgtcaggctaggagactccgataaaatgcctttgatgaatcctaatgaat 480
           |||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 621 ttcattatcttgacaggctaggagactcagataaaatgcctttgatgaatcttaatgaat 680

                                             
Query: 481 cataacctcttttctaagaaagcaattagaaaca 514
           ||||||||||||||||||||||||||||||||||
Sbjct: 681 cataacctcttttctaagaaagcaattagaaaca 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)