BAC Information

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BAC

Clone NameMSMg01-326B02
Chromosome15 (Build37)
Map Location 98,195,003 - 98,195,421
singlet/doubletsinglet
Overlap genenone
Upstream geneBC038822, LOC100042774, D15Ertd682e, Pp11r, Rapgef3, 4930570C03Rik, Hdac7a, Vdr, Tmem106c, Col2a1, Senp1, Pfkm, Asb8, AI836003, Olfr288, LOC634104, EG629524, H1fnt, Zfp641, Olfr285, Olfr284
Downstream geneOlfr283, 1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1, 2310037I24Rik, LOC100043418, Ccnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326B02.T7 (MSMg01no326_b02.b1)MSMg01-326B02.TJ (MSMg01no326_b02.g1)
ACCAG443790AG443791
length762734
length of high quality
(start - end)
447 (48 - 494)587 (77 - 663)
definitionCHROMAT_FILE: MSMg01no326_b02.b1 PHD_FILE: MSMg01no326_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:42 2005CHROMAT_FILE: MSMg01no326_b02.g1 PHD_FILE: MSMg01no326_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTAGTGATTCACAGAGTGGCAGCACCATGTTGCAATCCCATCA
ACAATGAATGAAGGGTTCCCCCCAACCCCCAATTTCTCTCCAGCATCTGT
TGTCAGTTATTTTGTTGATTTTTGCCACTCTGACTGGGGTAAGATGAAAT
CTCAAAGCTGTTTTGATTTGCATTTCCCTAATTGCTAAGGATGATGAGAT
TTTTTTTTTTTGAGCTATTTCTTAGCCATTTAAAAAAATTCTTCCTTGGA
GAACTCCCTATTTAGGTATCAGGTCCATTTCTTTGAATGAGTCTAATTGC
TTGTTTTAGTTTAGGTTTGTTTATTTACATCCCCAATATTGTCTCCCTTT
CAGACCCCCTAGCAGAGTTTCTCCCCCCCATTCCCTCCCCTTCACTCTCA
TGGGAGGGCAATTCTCCCCCCACCCCCGGTATCCTCACACTCTTGTGCAC
CAAGTCTCTACAGATTAGGCACATCCTCTCCCACTTGAGGCCAGATATTG
GCATCCCCTGGGGCCCACTATTGTGCCCGGGGGCCCTTCCTTAGGGCCCA
CCCTGGGGAAAGGCTCCTTTGGGTGGGGAAACCCTCACCCTTTTGTGAAA
TTGAAACCGTTACACTTTACACCATATTTGGCCTCCTCCCCTGGTGGGGG
GTTGGGCACACTCCCCTCTAGAGGCGGCCTTATAAGACGCTTTCCCCCCG
ATAAATCTTTTN
CCGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCATAGAGGAATCTCAAATGACT
GAGCAGCACTTAAAGAAATGTGTTCAACATTCTTAGTCATCAGGGAAATG
CAAATCAAAATGACCCTGAGATTTCATCTTTCATCGATCAGAATGGCTAA
GATCAAAAACTCAAGAGACAACACATGCTGGTGAGGATGTAGAGAAAGAG
GAATACTCCATCATTGTTGGTGGGATTGCAAACTGGCACAGTTTTCTCTG
GAAATCAATCTGGTGGTTCCTCAGAAAATTGGAAATAGTTCTACTTCAAG
ACCCAGCTATATTGCTCCTGGGCATATACCCAAAAGACGCTCTACAATAC
CACAGGGGCATGTGCTCCACCATGTTCGCGGCAGTCTTATTTGTGTTGTT
TTCTTTCTTTTTTTCCTTTTTTCTCTTTTGTAGTAGAATTTGAAAAGTGT
TGAGGTTAGACTTTTCCTTANAGGTTATGTAGAATCAGGCAGTGACTCTG
TCTTATTAGTTATTACAGAGCCACTTAAGTTGCTTATAGCATCTTTATAT
AATTCTGGTAGGTTACCTGTGTTTAGATTTTTCCATTCCTTTTATATTTT
CCAGCTATTTGCAATATACATTTAAAAAATGCTTCTCCAGACATTACTGG
CATCTCTTGTAAACTATTAAAAACTTAAGCAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_b02.g1 MSMg01no326_b02.g1 CHROMAT_FILE:
MSMg01no326_b02.g1 PHD_FILE: MSMg01no326_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:42 2005
         (587 letters)



>mm_chr15_98194434_98195421
          Length = 988

 Score =  717 bits (371), Expect = 0.0
 Identities = 407/424 (95%), Gaps = 10/424 (2%)
 Strand = Plus / Minus

                                                                       
Query: 169 aaagaggaatactccatcattgttggtgggattgcaaactggca----cagttttctctg 224
           ||||| ||||||||||||||||||||||||||||||||||||||    ||     |||||
Sbjct: 988 aaagaagaatactccatcattgttggtgggattgcaaactggcacaacca-----ctctg 934

                                                                       
Query: 225 gaaatcaatctggtggttcctcagaaaattggaaatagttctacttcaagacccagctat 284
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 gaaatcagtctggtggttcctcagaaaattggaaatagttctacttcaagacccagctat 874

                                                                       
Query: 285 attgctcctgggcatatacccaaaagacgctctacaataccacaggggcatgtgctccac 344
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 attgctcctgggcttatacccaaaagacgctctacaataccacaggggcatgtgctccac 814

                                                                       
Query: 345 catgttcgcggcagtcttatttgtgttgttttctttcttt-ttttccttttttctctttt 403
           ||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 813 catgttcgcagcagtcttatttgtgttgttttctttctttcttttcctcttttctctttt 754

                                                                       
Query: 404 gtagtagaatttgaaaagtgttgaggttagacttttccttanaggttatgtagaatcagg 463
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 753 gtagtagaatttgaaaagtgttgaggttagacttttccttaaaggttatgtagaatcagg 694

                                                                       
Query: 464 cagtgactctgtcttattagttattacagagccacttaagttgcttatagcatctttata 523
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 cagtgactctgtcttattagttattacagagccacttaagttgcttatagcatctttata 634

                                                                       
Query: 524 taattctggtaggttacctgtgtttagatttttccattccttttatattttccagctatt 583
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 633 taattctggtaggttacctgtgtttagatttttccattccttttatattttctagctatt 574

               
Query: 584 tgca 587
           ||||
Sbjct: 573 tgca 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 988
Length adjustment: 10
Effective length of query: 577
Effective length of database: 978
Effective search space:   564306
Effective search space used:   564306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)