BAC Information

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BAC

Clone NameMSMg01-328B18
Chromosome15 (Build37)
Map Location 94,135,075 - 94,135,425
singlet/doubletsinglet
Overlap geneAdamts20
Upstream geneYaf2, Zcrb1, Pphln1, LOC627623, Prickle1, Zfp42-ps1, LOC100042627, LOC100042631, D630010B17Rik
Downstream genePus7l, Irak4, Twf1, Tmem117, LOC100043315, Nell2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328B18.T7 (MSMg01no328_b18.b1)MSMg01-328B18.TJ (MSMg01no328_b18.g1)
ACCAG445293AG445294
length742727
length of high quality
(start - end)
319 (51 - 369)345 (78 - 422)
definitionCHROMAT_FILE: MSMg01no328_b18.b1 PHD_FILE: MSMg01no328_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:09 2005CHROMAT_FILE: MSMg01no328_b18.g1 PHD_FILE: MSMg01no328_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTGTTCTGCTCTGAGCCCCATTTTTTAATGGGGTTGTTT
GATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAG
TCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTG
GTCTCTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGT
TTCATTAGGTCCCATTTGTCAATTCTCGATGTTACAGCACAAGCCATTGC
TGTTCTGTTCAGGAATTTTTCCCCTGTGTCCATATCTTCAAGGCTTTTCC
CCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGTAGTTCT
TTGATCCATTTATATTTTTCGCCANCCCCCCGAGAAAATCATGGATNGAT
TCGAATTCTTCTACCTGATAACTTCCAGCTGTGCCTCCACCATTTGTTGA
CTATGCTGTCTTTCTTCCTCTGCTTAGTTTTATCTTCCTCTGTTCTAAAT
TTCTTGAACTTCGTTCGTGTGTCCTCTTCTTCTCCTCCTTTTATTTATTC
TCTTTTTGCTTCTCCTCTGTTCTTTTCCTCCTTCCCTGTCGTTTCCTTCC
TTTGTTCTGTTATTCTAATCCCACTCCCTCTTATTTTCAGTGCTGGTCCT
CGGATTTTTCTTTTATTTTTTCTTTCTTCCTTTTTTATACTT
NNCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTGTGTATGCATGTATATGT
GCGTATGTGTATGTATATGTGTGTGTGTATATATATATGCATATACATAT
GCATATATATACATATATATGCATGCATACACAAATACATGTACACACAC
ACAGAGAATTCATCCAGGAAGTTTTTAATTAAGAAAAAGAATTTACACAA
TGAAAAAAAATGTTTTAAATTTAAAATCCTCAAAAGTTTTAATGTCAATG
CCAGAGTCTGTCTCCCATCTGGTGTCCAATACCTCTTGTTTAATATCATG
TGTTGAATATTTGTTTTCTTTTCCATATACTTTTTACGTTTAGTAATAAA
TATTTAATCATTCCAGGGCCCCCCCCCCAGAACAGGTGTTTCATTGTGAT
GTCTTCTTAATGCCAAACCCTGCTCTGACCACTCCCCCGTCCCACCCATC
TCCCAGAGCTCCTTCAGTTCCAAGCCCTTTCTCTCCATCTGCTCCTTTTC
TGTTTTCTCTACTCAGGCAACCTTGTCCCGTTTCTTCCGTTTGCTTCCAA
ATGATACCTAACACGCCATCCTTGTCGCCCTTGTTCCCTCTTTTTCTCCC
CCCCTTCCCCATATTCCCCTATTTCACTCGCATTTTTTCCTCTTCCCGCC
GATTCTCTTTACCCCATTACTTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_b18.g1 MSMg01no328_b18.g1 CHROMAT_FILE:
MSMg01no328_b18.g1 PHD_FILE: MSMg01no328_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:09 2005
         (345 letters)



>mm_chr15_94134743_94135488
          Length = 746

 Score =  493 bits (255), Expect = e-144
 Identities = 323/353 (91%), Gaps = 15/353 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgtgtgtatgcatgtatatgtgcgtatgtgtat----------gtatatgtgtgtgtg 50
           ||||||||||||||||||||||||| ||||| |||           ||||| | ||||||
Sbjct: 683 tctgtgtgtatgcatgtatatgtgcatatgtatatatatatatacatatatatatgtgtg 624

                                                                       
Query: 51  tatatatatatgc--atatacatatgcatatatatacatatatatgcatgcatacacaaa 108
           ||||| ||||| |  ||||||| || || | ||||||||||||||||||||||||||| |
Sbjct: 623 tatatgtatatacatatatacaaatacacacatatacatatatatgcatgcatacacata 564

                                                                       
Query: 109 tacatgtacacacacacagagaattcatccaggaagtttttaattaagaaaaagaattta 168
           |||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 563 tacatgt--acacacacagagaattcatccaggaagtttttaattaagaaaaaaaattta 506

                                                                       
Query: 169 cacaatg-aaaaaaaatgttttaaatttaaaatcctcaaaagttttaatgtcaatgccag 227
           ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 505 cacaatgaaaaaaaaatgtttttaatttaaaatcctcaaaagttttaatgtcaatgccag 446

                                                                       
Query: 228 agtctgtctcccatctggtgtccaatacctcttgtttaatatcatgtgttgaatatttgt 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agtctgtctcccatctggtgtccaatacctcttgtttaatatcatgtgttgaatatttgt 386

                                                                
Query: 288 tttcttttccatatactttttacgtttagtaataaatatttaatcattccagg 340
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 385 tttcttttccatatactttttacttttagtaataaatatttaatcattccagg 333


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 746
Length adjustment: 9
Effective length of query: 336
Effective length of database: 737
Effective search space:   247632
Effective search space used:   247632
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)