BAC Information

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BAC

Clone NameMSMg01-328D14
Chromosome15 (Build37)
Map Location 86,515,964 - 86,516,213
singlet/doubletsinglet
Overlap genenone
Upstream genePpara, 2210021J22Rik, Pkdrej, AW124722, Gtse1, Trmu, Celsr1, BC021523, Cerk, LOC100042300, Tbc1d22a
Downstream geneLOC100042309, AW049604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328D14.T7 (MSMg01no328_d14.b1)MSMg01-328D14.TJ (MSMg01no328_d14.g1)
ACCAG445378AG445379
length803740
length of high quality
(start - end)
84 (47 - 130)247 (81 - 327)
definitionCHROMAT_FILE: MSMg01no328_d14.b1 PHD_FILE: MSMg01no328_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:19 2005CHROMAT_FILE: MSMg01no328_d14.g1 PHD_FILE: MSMg01no328_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCG
CGGAATTCTCCCATGTATATACCTCAAGATTATTTGACCGCATGTCACTA
AAAAACATGGAAATTAGAGTCCTGCATGGGTGGGAGGTCGTGAGCTAACA
AATCGCACTACGCCCTTCACTACCAACTTCTTCCTTAAATACATCCATAA
CCCTCACCCCATCCTCACATACATCCAAGCTTATTTACCTTACGTCTTCC
ATCACATCATATATTTAAATAATGATTCACTACTGCAAAACACTATCTAT
CACCCACATCACCTCAACCACCACAACTTTTTTTTTTCTAATTCACATAT
GCTTCCAAAATAATAAAACCAATCATTTCTCCCCCCCTTATTCCTCCCTC
ACTCTTCTATTGATTTCTATTTTATTTGTGCCCAACTTCCCTGTTNAAAA
NTATATTTTTTTATTCCTTATTCTTCTACACCTATTAACTCATCATATTA
ATCTTCTATCACCTATTTTTTACTCCCTTATCCATCCTTAATCTATTTCA
ATCTTTCCTCCTATCCACCACTATTATTTATTTAATCCCTTATACACTTC
TATCTTCCACTATTTCCTCAATTTACATTTTAACCTCTTATTCTTATACT
CCTCCCTTTCCACCCTTCACCACCCCCCCCCCTTCTATTTCTTCTCCCCC
TCACTTACTCTTCTCCATATATCATTTTCACCCATCTCTTTATATTTCTT
CTTCACCATATTAATTTCACTTTTATTTCACACCCTCCCTCCCTCTTAAT
CAT
NCCACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGGTGTTGCCATGGAGAG
AGCTTGTTCCAGAGAACGGTTGTGTCTGGACTCAGGCGTGCCCAGGGCAA
GACAGCACTGGGTAGTGGCTGGAAGATGAGTCTGGAAATAGCCAGAGAGT
TTGGATCACATAGACCCTGCAGCTAGGTGAGGGGAGGACAGGGGAGCTGT
TAACAAGCAACTATGAACAAGAGGACGTGCCCGTGTGCACTTGTGTAGGG
CATGTGGACCAAGGCACAAGAGGAACCGTTTTGTAACTGGCAAAGTTCAG
ACCCTGGAAATCTTATAAGTTGAGACGAGTCGGAGTAAAACTAGCTTCCT
CCTTGTTTCTGTGTTTGTCTCACCCCCCCCCGCGGGCAGTTANACCCCTA
TCTCCTGGAATGTCTCTCCATGCTATCGAGGCAGCTTAGAGCCTTAGCCT
TCAGCCAATGACCTTTTTCCTCCTTGTGATTTCCCATTCCCCTCTTCCAT
ACTATATTTTCCTTGTTTCTTTTGATCTATGTGCATGTTCCTTTACTCCA
CCTCTACGTCTTTTTTTTCCCCCTCACATTACGTCTTTTCTCTTCTCTTT
ATCTTCTCGACTATCCCCCTCTTCCTCTCTTTCCCTTCTACTTTTTACTC
TTCTCCGGCCTTAAGCTCTACCCACTCTTTTCCTCTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_d14.g1 MSMg01no328_d14.g1 CHROMAT_FILE:
MSMg01no328_d14.g1 PHD_FILE: MSMg01no328_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:19 2005
         (247 letters)



>mm_chr15_86515764_86516413
          Length = 650

 Score =  460 bits (238), Expect = e-134
 Identities = 246/250 (98%), Gaps = 3/250 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   actggtgttgccatggagagagcttgttccagagaacggttgtgtctggactcaggcgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actggtgttgccatggagagagcttgttccagagaacggttgtgtctggactcaggcgtg 260

                                                                       
Query: 61  cccagggcaagacagcactgggtagtggctggaagatgagtctggaaatagccagagagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccagggcaagacagcactgggtagtggctggaagatgagtctggaaatagccagagagt 320

                                                                       
Query: 121 ttggatcacatagaccctgcagctaggtgaggggaggacaggggagctgtt---aacaag 177
           |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||
Sbjct: 321 ttggatcacatagaccctgcagctaggtgaggggaggacaggggagctgttgttaacaag 380

                                                                       
Query: 178 caactatgaacaagaggacgtgcccgtgtgcacttgtgtagggcatgtggaccaaggcac 237
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caactatgaacaagagggcgtgcccgtgtgcacttgtgtagggcatgtggaccaaggcac 440

                     
Query: 238 aagaggaacc 247
           ||||||||||
Sbjct: 441 aagaggaacc 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 650
Length adjustment: 9
Effective length of query: 238
Effective length of database: 641
Effective search space:   152558
Effective search space used:   152558
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)