BAC Information

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BAC

Clone NameMSMg01-328D16
Chromosome15 (Build37)
Map Location 77,350,308 - 77,350,556
singlet/doubletsinglet
Overlap genenone
Upstream geneScrt1, LOC666497, EG666504, Fbxl6, Gpr172b, Adck5, Cpsf1, Slc39a4, Vps28, Nfkbil2, Cyhr1, Kifc2, Foxh1, Ppp1r16a, Gpt1, Mfsd3, Recql4, Lrrc14, Lrrc24, C030006K11Rik, D15Wsu169e, Zfp251, Zfp7, Commd5, Rpl8, Zfp647, 1110038F14Rik, Mb, Apol6, Rbm9, LOC100042318, Apol3, BC020489, BC085284, LOC624454, EG666639, 9030421J09Rik, EG626615
Downstream gene2210421G13Rik, 9130218O11Rik, LOC666661, A330102K04Rik, EG545115, LOC666348, LOC666679, 2310016F22Rik, Apol2, Myh9, Txn2, Foxred2, Eif3s7, Cacng2, Rabl4, Pvalb, Ncf4, Csf2rb2, Csf2rb1, 1700061J05Rik, Tst, Mpst, Kctd17, Tmprss6, Il2rb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328D16.T7 (MSMg01no328_d16.b1)MSMg01-328D16.TJ (MSMg01no328_d16.g1)
ACCAG445382AG445383
length752770
length of high quality
(start - end)
254 (75 - 328)249 (80 - 328)
definitionCHROMAT_FILE: MSMg01no328_d16.b1 PHD_FILE: MSMg01no328_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:19 2005CHROMAT_FILE: MSMg01no328_d16.g1 PHD_FILE: MSMg01no328_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:19 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NGAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCC
GCGGAATTCCAAGACATTTTACGAGAACAAGACATGGAGAGAACCCAGGA
GTCTGCAGAAGCTCTGCTGTGAGTGGAGTACATGCTGACACAGGATAGAT
GGAGGAGGCTAGCCCAGGCTGAAGGATCAGGCATTTGGAAGTACTGGGAT
TCAGTATCTTCTGAGCCATGGAGGATGAAGGAAAAGGGGGAAGGTCCTAC
ATGCCAAAGTGAGAAAATCTCCTCCTTCAGTGAGCACTGAGGAGGGGATA
AATGAAAAACTAATAGAAATAAAAAAGGATTTTTCATAACTGCTTCTCGG
TATGGTGGACGAAACCATTTACTGTAGGCAACAGGTAGATCATAGCCAGA
GGTGGGACATCTGGGAGATGTTTTTCCCCCCCCCACCCTGATGGGGCAGG
CTAGTACGCTGAGCCGAGAGTTAACAGATAGGATAGAGTAGAATCAGCTG
CAGTCGCCATGAGGCCCATTGTATAATAGGGTTGGGCCAACACTTTGCAT
GGATTTATCTATCGAATCAACCTGTGCGTGATTGTCTCTCTCCTTTCCCT
CGTCTCGCTTTCTTTTCCCTCTCTATGGTCTTTTTCGTCGTCCTCTCCTG
TTCTTATTCCGCTCATGATTTGTTCGTCTTTCTTGTTTCTTTTGTTCCGC
CTTCCCCCCTGTGGTCTCTGCTTTTCTAGTATTTCGCCCCTTTCTTTTAT
TN
NNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGATGCCTTTGCAGAGGGAA
CACAGCATCCCTGTGATTCCAGTTTAGACAGGGTCCAGTGATTGACACAG
AGCCTATATGTGGCTCACCTTGTAGACTCCCTGCTGAGTAATGAGGATGG
AGCCAGTAAGCTTTAAATAGGTCAGGGATCCAGCCTCAGGAGTGACTGTT
CCAAAATAGCAGTGGGTTGAGATTCAGGAGTCCGAGGAGAGCACAGGAGA
GTCACCCCATCAGGCAGTTCTGCAGAATGTATATGGACACCACTCATTCC
TTGTTCACCACAGAAGGTTGGCTGGTCACTGTCCTATCAATATATGTCAA
ATATCTCAGTATTTTTGACTAGGTTCCCCTCACTCTTTTGTAGTAAACAT
AGGGAGGTGTTAGTTGCTGTTCCTCCACCGATTTTTCGTTCTTCTACTGC
CCCTGGATATTCATTCTAGACTTGCTCTTGCTCCCTTGTCCTGTTTTTTT
TCTTTCCTGTCACTGTAGTATATCTTTTCCCTAGCTGGCTCAGAATTGGT
CTCTTTATTCTTCCTTCTTTCTATTTTTCCCCCTCTTTCTTTTTACTCCC
AATTTCATCCTCTTTTTTCTTTACTTTCCTACCCCCATCATTCTCCCTGA
TTTCTCTTCGTCACTTTCTTTCTTCATTCCCCTCCCTCTGTTTCTCATTC
CCTCCCTTACCTCTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_d16.g1 MSMg01no328_d16.g1 CHROMAT_FILE:
MSMg01no328_d16.g1 PHD_FILE: MSMg01no328_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:19 2005
         (249 letters)



>mm_chr15_77350108_77350756
          Length = 649

 Score =  420 bits (217), Expect = e-122
 Identities = 241/249 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagatgcctttgcagagggaacacagcatccctgtgattccagtttagacagggtccagt 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagatgtctttgcagagggaacacagcatccctgtgattccagtttagacagggtccagt 260

                                                                       
Query: 61  gattgacacagagcctatatgtggctcaccttgtagactccctgctgagtaatgaggatg 120
           |||||||||||||||| | |||||||||||||||||||||||||||||||  ||||||||
Sbjct: 261 gattgacacagagcctgtgtgtggctcaccttgtagactccctgctgagttctgaggatg 320

                                                                       
Query: 121 gagccagtaagctttaaataggtcagggatccagcctcaggagtgactgttccaaaatag 180
            ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagccagtgagctttaaataggtcagggatccagcctcaggagtgactgttccaaaatag 380

                                                                       
Query: 181 cagtgggttgagattcaggagtccgaggagagcacaggagagtcaccccatcaggcagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 cagtgggttgagattcaggagtccgaggagagcacaggagagtcaccgcatcaggcagtt 440

                    
Query: 241 ctgcagaat 249
           |||||||||
Sbjct: 441 ctgcagaat 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)