BAC Information

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BAC

Clone NameMSMg01-330G08
Chromosome15 (Build37)
Map Location 56,174,906 - 56,175,218
singlet/doubletsinglet
Overlap genenone
Upstream geneCol14a1, Mrpl13, Mtbp, Sntb1, LOC665348, LOC100039908, Hba-ps3
Downstream geneHas2, EG594843, LOC435442, LOC100040067, LOC100039984, BC026439
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330G08.T7 (MSMg01no330_g08.b1)MSMg01-330G08.TJ (MSMg01no330_g08.g1)
ACCAG446965AG446966
length729732
length of high quality
(start - end)
319 (46 - 364)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no330_g08.b1 PHD_FILE: MSMg01no330_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:05 2005CHROMAT_FILE: MSMg01no330_g08.g1 PHD_FILE: MSMg01no330_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTATTTAACTGTAATTGTCCAGATGATGAGATTTTTATTTGATT
GATTTTTACAAGTAATTTGTTGCCATACATTTTTCTAAGAGAGCTATTAG
ACAATGGGAAACCCAAGTTCCTTGTGAGATACAGATTCCTGGCTACTACT
CCAGGAAGGCATAATGACAGGAGACACTAACAATGAAGAAAACAGAGAGA
AACAAAATTGTATCTCCAACAAGGGAGCAATAGCACGATACATTGTGGGG
AATTCTCTAGACTAAAGCTTCCTAGTACATCCTCATGAAAGTGCTGCAGC
TTTACCCCCCCCTTTTTTCTCACTCACACCACATAAATAAACGTAATGTT
TTTTTTAGAAAGTAAAAACTATAAAATGAGGGAAACCCATCAAAGACATT
AGAAATGACAAGCATCACAGGCTTGAATTCATTTAATTATACGGATGAAG
ATTTATAGGACTAGAGAATACTATTGTGCTTTAAAAAACATAGTAAGGGA
AAACTAGACCTCAAATATTCGTTGATCATATTTGTTCACTCTTCCATTGT
AAATGGAAGAAGCACTTTTGTACTGGATGATCTCAAAGAGGACATTTCAA
AAATTTCAGCTTTGGTAATCCCCTTGGTGCTTGGATTCAGAAAACTTTCC
ATAGTGTAAAATTCTGGTATCTATATCTT
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTAACAATTTATTTTATTTTT
TTATTATTTCTTTTAGATTATTTCCACACATGAATGTGTGTCATGTGAGT
GGCTTGCGCATTACCTGTGGGTGTTAGAAAAGGGCATTGGAACCCCTAAA
ACAGGAGATACCAGATGTTTGCAAGCCACCATATTGGTGCTGAGAATTGA
ACCCAGGTCTTCTGCAAGAGCAGTCAGTAGTTTTAACCATTCAGCTACCT
CTTCTGCCACCAATAAAGAGAAACTTAAGAAGACCATTTAAGTGATTTCC
ACAAGCTTCTGTGATTTTTTCAAACCCACCCCCCATGAAGCAAGTATGGA
GAACTGTATGTCATAACCTGTAACTAGAATGACCTATGGATGTCTCTGGG
AACAAAGTGATTTTCTCCCCTGGAAGGAAGCTTGGCTGGTATAGCTCTAC
AATTTGACTACCTGGAAGATCCTTGTTACTCCAATAGTGTGAGTGAATGC
TGGAACTCCTGCTATGTGGAGGACATTGTACGCAGCTTCTTAAGAGAAAA
CATCGACCATAATACTATAGTTGTAATGAGAGAATACCGATGGATGGAAA
CTCATGGAGCTCCACAGCGATCAGGTGAATCACAAAGACAGCTATGTGCA
TGTCTGACTATATAATGCTCCAATGCTATCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_g08.b1 MSMg01no330_g08.b1 CHROMAT_FILE:
MSMg01no330_g08.b1 PHD_FILE: MSMg01no330_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:05 2005
         (319 letters)



>mm_chr15_56174702_56175420
          Length = 719

 Score =  582 bits (301), Expect = e-171
 Identities = 310/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctatttaactgtaattgtccagatgatgagatttttatttgattgatttttac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gaattctctatttaactgtaattgtccagatgatgagatttttatttgattgatttttac 458

                                                                       
Query: 65  aagtaatttgttgccatacatttttctaagagagctattagacaatgggaaacccaagtt 124
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 aagtaatttgttgggatacatttttctaagagagctattagacaatgggaaacccaagtt 398

                                                                       
Query: 125 ccttgtgagatacagattcctggctactactccaggaaggcataatgacaggagacacta 184
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 397 ccttgtgagatacagattcctggctactgctccaggaaggcataatgacaggagacacta 338

                                                                       
Query: 185 acaatgaagaaaacagagagaaacaaaattgtatctccaacaagggagcaatagcacgat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 acaatgaagaaaacagagagaaacaaaattgtatctccaacaagggagcaatagcacgat 278

                                                                       
Query: 245 acattgtggggaattctctagactaaagcttcctagtacatcctcatgaaagtgctgcag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 acattgtggggaattctctagactaaagcttcctagtacatcctcatgaaagtgctgcag 218

                        
Query: 305 ctttacccccccc 317
           |||||||||||||
Sbjct: 217 ctttacccccccc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)