Query= MSMg01no330_j04.b1 MSMg01no330_j04.b1 CHROMAT_FILE:
MSMg01no330_j04.b1 PHD_FILE: MSMg01no330_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:19 2005
(186 letters)
>mm_chr15_49186303_49186886
Length = 584
Score = 333 bits (172), Expect = 5e-96
Identities = 182/186 (97%), Gaps = 2/186 (1%)
Strand = Plus / Minus
Query: 1 aagcccgttaactttaaaaaaaaattatgtttcacacttctgaaccatctctaagaatag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aagcccgttaactttaaaaaaaaattatgtttcacacttctgaaccatctctaagaatag 325
Query: 61 tctctaaattaaaaaaaaaagtctgttatttataagtaaattcatccattcaaatactaa 120
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctctaaatt--aaaaaaaagtctgttatttataagtaaattcatccattcaaatactaa 267
Query: 121 gttattgaatacaatgagatgaatactatgagcttgtataatacgtttgtcagtagaaat 180
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 266 gttattgaatacaatgagatgaatactatgagcttgtataatacgtttgtaagaagaaat 207
Query: 181 atgtca 186
||||||
Sbjct: 206 atgtca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 584
Length adjustment: 8
Effective length of query: 178
Effective length of database: 576
Effective search space: 102528
Effective search space used: 102528
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no330_j04.g1 MSMg01no330_j04.g1 CHROMAT_FILE:
MSMg01no330_j04.g1 PHD_FILE: MSMg01no330_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:19 2005
(568 letters)
>mm_chr15_49024635_49025598
Length = 964
Score = 998 bits (516), Expect = 0.0
Identities = 554/568 (97%), Gaps = 4/568 (0%)
Strand = Plus / Plus
Query: 1 agatattaataaaatatataatctaacagttttgcaaaccaaaaattatgtcatgtatat 60
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 agatattaatataatatataatctaacagttttgcaaaccaaaaattatgttatgtatat 260
Query: 61 ctaagtttttaaaaggttattaattttgctaatattcttttatgacattaaacattttat 120
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ct--gtttttaaaaggttattaattttgctaatattcttttatgacattaaacattttat 318
Query: 121 agatagtcaataattatcattagaactaatcaaaagcttcaattgcttcacatttttcaa 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agacagtcaataattatcattagaactaatcaaaagcttcaattgcttcacatttttcaa 378
Query: 181 aagaatgtgagctttttacttttagttttatacaagatcatatggtagaatagatggaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aagaatgtgagctttttacttttagttttatacaagatcatatggtagaatagatggaaa 438
Query: 241 atgcttagaaataacattccactgttaaggcattttctatctttaaataacattaaaatc 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atgcttagaaataacataccactgttaaggcattttctatctttaaataacattaaaatc 498
Query: 301 aactgaaccaccatatcccttacctggaaatatccagacttgattctattagattatttc 360
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 499 aactgaaccaccatttcccttacctggaaatctccagacttgattctattagattatttc 558
Query: 361 caagatgagtaatatgtaatataaaatgtaaaatataactgtaaaatgacttggtgtgta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 caagatgagtaatatgtaatataaaatgtaaaatataactgtaaaatgacttggtgtgta 618
Query: 421 aaactgtgaaccagttttatctcttgggaatccatctcaagtatgaagtagagagctgac 480
| |||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||
Sbjct: 619 agactgtgaaccagttttatctct--ggaatccatgtcaagtaggaagtagagagctgac 676
Query: 481 tccaaacggttgtgctctgatctttacatgcatggcacatgatacccatttacatataaa 540
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tccaaaccgttgtgctctgatctttacatgcatggcacatgatacccatttacatataaa 736
Query: 541 tcacatgaacatgcacacacaaaaataa 568
||||||||||||||||||||||||||||
Sbjct: 737 tcacatgaacatgcacacacaaaaataa 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 964
Length adjustment: 10
Effective length of query: 558
Effective length of database: 954
Effective search space: 532332
Effective search space used: 532332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
