BAC Information

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BAC

Clone NameMSMg01-330L17
Chromosome15 (Build37)
Map Location 7,016,803 - 7,017,116
singlet/doubletsinglet
Overlap genenone
Upstream geneDab2, C9, LOC100039396, LOC100039412, Fyb, LOC100039453, EG665511, 4921505C17Rik, Osmr
Downstream geneLifr, Egflam, Gdnf, Wdr70, LOC665556, LOC621001
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330L17.T7 (MSMg01no330_l17.b1)MSMg01-330L17.TJ (MSMg01no330_l17.g1)
ACCAG447209AG447210
length733734
length of high quality
(start - end)
318 (45 - 362)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no330_l17.b1 PHD_FILE: MSMg01no330_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:30 2005CHROMAT_FILE: MSMg01no330_l17.g1 PHD_FILE: MSMg01no330_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGAGT
GCGCCACCACTGCCTGGCAGAAGAAATCTTAAAACCTCAATGACTAAAAA
AGTTAGCAGGAGAGATGTGATCCAGAACAAAGACCTTGGGTTTCTATTTA
CTGATTAACCATCCTCCGCTCTTCCTTGAAGTAACAGCTCACTGACTATG
TTAGCCAGCAGTCACCACTAAACCCGTGTTCCTCTGCATTGGTACAGACA
GTTTCAGAATTGATAGCTTTTTCTATTCCCACAGCTTATACAAATGTTTA
TGTCTAAAGTGATTTTTATTCCCCCCCGCCCTCTGAGAGCAATACAACTC
TCCTCAAACATTTTACAATGAACAAACTCTCATCCACCGGGCAGAAAACA
GAACACGGAAGAGTCATTACGCAGATGAAATGGCCAAGAACCGAAAAGCT
TGCACACATGAAGACACATGGGTGACAGTTTGACAGGAGAAACAGAAACC
TGAACTTCACATATACCAAAGCAGTGATGCAAACAGGCTTTCTGTATCTT
CCAGTGCCTGACCCGTGGAAAGATCGCTAGAATCTTTATCCCACCGCTCT
TAGCATTTGAAAGAGGGTCAAACAACTCCAAAACGATAGAAACAGCAAAG
TACTTAACCACACCATATCGACTAGATGTAGAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACACACACACACACACACACACAC
ACACACACACACACACACACACACACACACACACACATGTCTGCCTTAAA
TCCTGACTCTGTTGACCTGGAGTTCTACTTTTTGGTACTAAACAGAATAA
AATTCTTTGGTACATGACAGTCCTACAAAAAACAAAGAATACTATTGGGT
TGTTCTGGGTCCTTTGCTGTGGCTGTGTGGTGGTTTGAGTGAGAATGGCC
CCCATAGGATTGAATACATAGTCCCTAGTTAGTGGAACTGTCTGAGAGTT
AGGGGGTGTGGCCCTTTATTTCATGCCCCACCCCGTTACAGGAGGTGTAT
CTCTGGGGGGGTGGGTTTTGAGAAATCAAAATAACATATCAAGCCCAGTG
TTTCTCTCTCTGCCTGTAACTTACAGATCAGATGTGAGGCCTCAACAACT
TCTCTGGCACTAGGCTTGCCTTTCTGCCATCAGGCTTCCACCATGATGCT
AATGAACTTCCCTTCAAAACTATAAGCAAGTCTCAAATGAAATGCTTTCT
TTTATAAAGGTTGCCTTGGCCATAGTGTCTCTTCACTGCCATAGAACAGT
AACTAAGACAAGGTAAGACATGCTTTTGTATACTCACTGCATTGCAGATC
TAGCATGACATCTCTGTTATTCTTCAAAAAAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_l17.b1 MSMg01no330_l17.b1 CHROMAT_FILE:
MSMg01no330_l17.b1 PHD_FILE: MSMg01no330_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:30 2005
         (318 letters)



>mm_chr15_7016529_7017246
          Length = 718

 Score =  607 bits (314), Expect = e-178
 Identities = 314/314 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagaaatccacctgcctctgcctcccaagtgctgggattaaaggagtgcgccacc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gaattcagaaatccacctgcctctgcctcccaagtgctgggattaaaggagtgcgccacc 529

                                                                       
Query: 65  actgcctggcagaagaaatcttaaaacctcaatgactaaaaaagttagcaggagagatgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 actgcctggcagaagaaatcttaaaacctcaatgactaaaaaagttagcaggagagatgt 469

                                                                       
Query: 125 gatccagaacaaagaccttgggtttctatttactgattaaccatcctccgctcttccttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gatccagaacaaagaccttgggtttctatttactgattaaccatcctccgctcttccttg 409

                                                                       
Query: 185 aagtaacagctcactgactatgttagccagcagtcaccactaaacccgtgttcctctgca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 aagtaacagctcactgactatgttagccagcagtcaccactaaacccgtgttcctctgca 349

                                                                       
Query: 245 ttggtacagacagtttcagaattgatagctttttctattcccacagcttatacaaatgtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ttggtacagacagtttcagaattgatagctttttctattcccacagcttatacaaatgtt 289

                         
Query: 305 tatgtctaaagtga 318
           ||||||||||||||
Sbjct: 288 tatgtctaaagtga 275


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)