BAC Information

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BAC

Clone NameMSMg01-332H16
Chromosome15 (Build37)
Map Location 38,358,637 - 38,359,085
singlet/doubletsinglet
Overlap genenone
Upstream geneNcald, 4930447A16Rik, LOC100041313, LOC667534, Rrm2b, LOC100041478, Edd1, Odf1, LOC382986, LOC667563, Klf10
Downstream geneAzin1, Siah1-ps2, Atp6v1c1, Baalc, TOB3L, Fzd6, LOC636952, Cthrc1, Slc25a32, Wdsof1, LOC671215, Rims2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332H16.T7 (MSMg01no332_h16.b1)MSMg01-332H16.TJ (MSMg01no332_h16.g1)
ACCAG448502AG448503
length1,2871,333
length of high quality
(start - end)
556 (135 - 690)571 (134 - 704)
definitionCHROMAT_FILE: MSMg01no332_h16.b1 PHD_FILE: MSMg01no332_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:58 2005CHROMAT_FILE: MSMg01no332_h16.g1 PHD_FILE: MSMg01no332_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGCCGGCTTTTTNNNNNACATTGGGCGCTAAGACTCCTATGGGAGAGG
ATCCGCGGAATTCTGGNGNCAATANNNACCTTCATCGCCCCCCNGGNAAN
CANNNANANATCCANCAGGCATTAAACTCCCTCTGGGATGCATGCTTTCT
AGTAGGTACAAGCAGATATTAAAATGAACAAGCTTGATTTTGTATTTGCT
GATGTGGAAAAACATACATGAAACAGTAAGAAAATAACATGCACAGTACA
GTACTCTTTAGAAGTGTAAATCCACCATTTGCACAGCATGGACATGACCT
TGTGTCTAATCTTCAGCACCATAAAGAAAACAAACACAAACCGTGAGTAT
GCATTATACCCAGGGTACACTTAGGCTAGGTGATTTGTTTTGTTTTGTTT
TGTTTTTGTTTGTTTGTTTTTTTTTTAATTTTGAGACAGGGTTCCTCTGT
GTAGCCCTAGCTATCCTGGAACTCTCTCTATAGATCAGGCTGGCCTCACA
TTCATAAAGATCTGTAGGCTTAGATTTCCCAAAACCTAATTGAATAAGAC
TTTTTAAATGCTTCAGCCTCCCTTCTAGCCTACTCACCAAAGTTATGGAA
GAAAGATGTTTAGTAGGACAAGGGGAATGTGAACCTGTTTAGAAACCATT
CTTTGGGGGCAATTCCAAACACAAATCAATAGCGGCAGTCCAGTCCAATC
AGCAAACACCAAACATGAATTAGTACCAGCAGCTTGTTTCAGAAGAAACT
GCCAGGTTCCACCAAATTGGNACAAGTCCGAGGAAGTGTTTTGAAGCAGC
CAGAATACCAGGAGGAAGTTCTTTGACATGTTTCTGTCCCTGAAGTCCCG
AAAAGTGAAAAATTAGAAGACTAGTGAAGACCCCTGAAGATCAGGAAAAA
TTGTAGGAACTACCCATCTAAAAGGGGCCTTTTATGGTTATTGGGGGTTA
ATTAAAATTTTTTTAAAAAAAGGGGTCTTTTAGGTGTAGGACTCATTATA
AAATTTTTTTATTAGAAATTTTTAAAAAAATTAATTTGGATGAAGGGGTG
TCTAAAAAAAGTTTTAATTTTTTTTTTTAGANGTTCTGGTCCTGGCTCTT
TTGTAAGGTGATTAAAGGTTTTTATTGATTTAAATGGGGTGGGGGGATTT
ATTTAAAATTTTTTAAAAGTTTATGATTATGAATAAATNNTNGTAATTTT
TTGTATTCTTTATATTTATCTTATTATTATGTGTTGGTGAATTGGTTGTG
TTTATTGATGGATTATTTGTGGTTATAATGAAATTTT
CCGCTTTCTTNNNNGCGATGGTTAGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCTTAAGAGCCCTTTGNCTACNTA
GNAAATTCCAGGTCAGCCTTGAGAATATCTGGCGAGACTCTGGATCAAAA
GACAAAAGAAGAAGAAATGAAGTATCGAGCCACCTTTCCTGGGTAAGCGT
AGCTACCACCCCTCACTAGAGAAGCCTCTCCTCACAGCAATTGGAGATCA
CCACAGCTGCCCACAGCTGGATGCAAAGCGGAGATCATGGGAGCCCAGCC
CCAGTGGATTCATCTACATCAGAGCGGCTGCATCTATGCATCAGGGAACA
TTGCAGAAGATGGGGTAGATGCAGGCAGTAGGGGCACTGGAAGATTTTTT
GTTTGTTTGTTTGTTTGGTTTTCTGAGACAGGGTTTCTCTGTGCAGCCCT
GGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAA
TCCGCCCGCCTCTGCCTCCCAAATGTTAGGATTAAAGGTGTGTGCCACCA
CTGCCTGGCGCACTAGAAGAATTTTAAAAGCCAGAAAATCAGACAGTCTG
CTGCAAACAGACAGTCTAGAAATAGCTGCATAAAGGAGACCAGAACAGTG
ACCAGATCAATGGGCATGTTAACGTGAAAGGAGAAAACTCATGGGTCCCC
AACCCTAGACAAAGAGCTCTAGGCAACTAACAGTTACTCAGAGAAAGCCC
CTCATTAGTGTCCTATGCAAACTGATCCACCCTGAATCATATACACACCA
ACCAAAACAGATTCCACTAGTTGTATTTATGTATAATTGGGCACATTGTG
CGCATGTGCACACACACACACACACATATTTCCCCAGAGAGAGAGAAAGA
GAGAGAATAGAAGAGACAGAGAGATAAAGAGATGCTGTATTTATAATTCC
AAGAAAAAACAACTTTTCCTTCTGAGCCGAATAATATTCAAAGGCTCCTA
CTCTTGTTTTTTGTCTACCACTTTCTCTTCCTCTTTCTTCACATCCCATC
CCTACCTTCCCACTCCTCTTTTATTCTCTTCTTTCTCCTCCTCTACTCCC
TTTATACCACTCTCTCTTTCTTCCCTTCTCCTCTCTTCTCCTAACTCATA
TTATCACTTCTATCTTCTAATCTTCCTACACCACTTCTCCTCTACTTTAC
TACATCTTCGACTCCTCTATCTACTTCCCTTTTTACCTCTCTCCATACCT
TTCTCTATTATCGATGACTCAACTTATCTGTTCTACGATCTTCTCATTTC
TCTCTCATATTACTTTCCTTATTCTCGTCAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_h16.b1 MSMg01no332_h16.b1 CHROMAT_FILE:
MSMg01no332_h16.b1 PHD_FILE: MSMg01no332_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:58 2005
         (556 letters)



>mm_chr15_38358637_38359592
          Length = 956

 Score =  795 bits (411), Expect = 0.0
 Identities = 439/449 (97%), Gaps = 3/449 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggatgcatgctttctagtaggtacaagcagatattaaaatgaacaagcttgattttgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gggatgcatgctttctagtaggtacaagcagatattaaaatgaacaagcttgattttgta 390

                                                                       
Query: 61  tttgctgatgtggaaaaacatacatgaaacagtaagaaaataacatgcacagtacagtac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tttgctgatgtggaaaaacatacatgaaacagtaagaaaataacatgcacagtacagtac 330

                                                                       
Query: 121 tctttagaagtgtaaatccaccatttgcacagcatggacatgaccttgtgtctaatcttc 180
           |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tctttagaagtgcaaatccatcatttgcacagcatggacatgaccttgtgtctaatcttc 270

                                                                       
Query: 181 agcaccataaagaaaacaaacacaaaccgtgagtatgcattatacccagggtacacttag 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 agccccataaagaaaacaaacacaaaccgtgagtatgcattatacccagggtacacttag 210

                                                                       
Query: 241 gctaggtgatttgttttgttttgtttt-gttt--ttgtttgtttgttttttttttaattt 297
           ||||||||||||||||||||||||||| ||||  |||||||||||||| |||||||||||
Sbjct: 209 gctaggtgatttgttttgttttgtttttgtttgtttgtttgtttgtttgttttttaattt 150

                                                                       
Query: 298 tgagacagggttcctctgtgtagccctagctatcctggaactctctctatagatcaggct 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 149 tgagacagggttcctctgtgtagccctagctatcctggaactctctctatagaccaggct 90

                                                                       
Query: 358 ggcctcacattcataaagatctgtaggcttagatttcccaaaacctaattgaataagact 417
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 89  ggcctcacatttataaagatctgtaggcttagatttcccaaaacctaattgaatacgact 30

                                        
Query: 418 ttttaaatgcttcagcctcccttctagcc 446
           |||||||||||||||||||||||||||||
Sbjct: 29  ttttaaatgcttcagcctcccttctagcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)