BAC Information

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BAC

Clone NameMSMg01-332J10
Chromosome15 (Build37)
Map Location 3,202,766 - 3,203,247
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC674207, LOC666163, EG666167
Downstream geneSepp1, LOC100039139, Ghr, LOC223278, Fbxo4, AW549877, LOC100039196, Oxct1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332J10.T7 (MSMg01no332_j10.b1)MSMg01-332J10.TJ (MSMg01no332_j10.g1)
ACCAG448578AG448579
length1,3171,322
length of high quality
(start - end)
514 (135 - 648)594 (133 - 726)
definitionCHROMAT_FILE: MSMg01no332_j10.b1 PHD_FILE: MSMg01no332_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:11 2005CHROMAT_FILE: MSMg01no332_j10.g1 PHD_FILE: MSMg01no332_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGGCGGCTCTTTNNNNCCATTGGGCGCTAAGACTCCTATGGGAGAGGA
TCCGCGGAATTCTTGTTCATACTTAAGCTCTACTCTGACCCTTNGGNTNN
NGNNGANNNNGNNAGANGCCCCTAAAGAGATCTGGAAAGAAAAANATGAG
ATTATGAAATAAAATGGTTTGGNTACTAGAATAGAGTTGAGGTTTTGNTC
TCCTTGAATGCTTATGTCTAAGGATCATCCATACCCTGAGCCCACACATC
TGAGTCCCAGACAGGCTGACTGCATGAGATAAGCTGACAGGATACTCCAG
TAAGGTACCAAGGTGACCAGAAAGCCAGTATCCAGAAGCCTCCTGCACCA
TCACTACCACCAAAAAGCAGCGTCTACCTTCAAAAGCTTTGCTCATTGAG
CTTTCTCTAAAATGCAAGAACTTGTTGGAGATTTTCAATCCGAAGTTCTT
AGGATGAAAGAGTTCTGGTCCTTTTCCAGAGCAAGTTCTGAAGGAAGAAA
AAGAAACCCTCGAGTTAGCACCTAATACATGGGGTAGGGAGGGGATAAAT
AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAGGTG
CTGAAGGATGATGCTTTAAAACTACACAGTTACATCCATTTACCTCCAAG
TGTGCAAAAGCAACGGAAGGAAGCCATACCACACAGTAGGGCTAAGGGTG
GTGATGGCTATTTCAAACTCCAAAGGTATGAGAAAAATCTGCATTTTAAT
AAGACATCTGGATGCTTCCCAGAGGCCTGCANGAGAAAGCTTCTTCCATA
TGGAAAGCAACTGTTATTATCTAATGGCATGTGAAGAAGAGGCCTGGACT
GTATAGAAAGACACGTGGCAGGGAGGGTTATAGTCTCTCACCTGTTTACA
GCAGCTATTTCTTCTAGAAAGCTGTCATTGTGTCTGGGCACCTTAAAAAA
TGGTAGGCATCCCCTATGAGAAGGGGGTAGAAAAAAATTTGTCGAAAAAA
ATTTTTTAAAAATGGGAGGTTTGTTGGTTTGTGTTCTAAAGTAATTCTTG
CAAAAGGAGGGGAGCCAAAAAGGGAGAATAAAAAAACCCTCCCTCTTCCC
CAAGGTACTTGGGGGGGGATTTAAAAAAAAAAAAAAAANATNGGTGGGTA
TTAAATTTTTTAGCGCACTTTTTTTTTTTNAANCTTTTNAAAAAAATGAG
GGGTATGAAACCCTAAAAAAGGACTTTTTTTTTATTTTTTTAGTGGAAAA
AAAGTGTTTTATATTTTTTTGATAGTTAAAGATAGGTTTAAGTTAGAGTG
AATTTTTAGTTTTAAAA
CCACTCTCTTTNNNTCGAGGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAAGTCCCCGGNCTCACTT
GCACTCCTGAAAATGTCCCTTTCAGGCTATCAACTCCCCAACTACTGAAG
AGTGGGTGGAAGATTGGACCTCGGTTGGCCAGAAAAGCAGGTTTTCTTTT
TCCTGGAAAGACAGGACTGGCTTACAGAAAGGAAACTGTGGGAGTGGACA
TGCAGTGTGGACCATTGTGGGAAAACAGCAAGCTCAAATTGCCAGTGCCT
CTGAAGTACCCACAAGTCTGAGTTCTCCCCAAACACATTCACACACCTTG
TGATCTGCCCATCCCAACACTGTGACATTTGTGTCCCCAAGCCATTAGAC
ACACACCCCATCTCCAGCAGATTCCCCCACCTCAGCCTAATGAACTGGTC
CTGAAGACTGTTTCTCACCTGTCTGAAGTGGGCCTGACTCAGGACCACTG
AGTGTGGCCTCTCCTACCTGCTTTTGATTTTCCTGTATGTATGGCTCCCA
TCTTTTTGGCCTTTGTCCCCTGATTCGCTAGCATTGTGAAATACATTTCA
GCACTCAGCACACTGCACAAGCCCGTGGCAGATGCTCAGTGAACATTTGT
AGAACACCTGTGATGAAATAAGAGGTTAGTGTGTAGAGCAGATGGAAGAG
GCTGAGGTTTGGAAAGATCTTCCAGTACGCCCTCGCTTCCCTGAAAGGCA
CTCCTACGCCTGTTACCTGTAGCATCGGAATCCCAGCATGTTGCCTTAAT
GCTTTGTTGCTAAAATCTAGTATTTAGATTTCAGCTGTGTCCCAAAAAAT
TAAAATTTTTCTGATTACCCAGATACTTGTCTGTTTGGAATGTCTCAGAC
CATAACTTAAATCTTGGTGAACTACTTCTAAACAAAATCACTTCTGTCAC
AAATAGAAAAATTATCTCGAATTGGTTTAAGTTGCAAGACTTTTTATGTA
GTTAGAGGTCAAATCCAATCTTATTTTGCATTCCCAGGTAAAAATAACCT
TTAAAATTTGGGAGGCCTTGGGGATGCCCTTTGCCTTGGGTATGTNCATC
CCTCCACCTACCTTATACACCCTTCTACTCAGGTCTAAAGGGTAAAACCC
CAATTCTACCTTTGCAGGAATATCTCCCCTGGCCACTTTTCTCAAAACAC
CTTACTTTTAATTAACTTATTTCTCACAAATACTCTGGACAAATTTCTTT
TTTCAATCTCAAATCATTGGCGCGTGACATGTGTCCACATATCTAGACAA
CATTATCCTCCTCTGTGGGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_j10.b1 MSMg01no332_j10.b1 CHROMAT_FILE:
MSMg01no332_j10.b1 PHD_FILE: MSMg01no332_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:11 2005
         (514 letters)



>mm_chr15_3202638_3203551
          Length = 914

 Score =  795 bits (411), Expect = 0.0
 Identities = 472/514 (91%), Gaps = 32/514 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaagaaaaanatgagattatgaaataaaatggtttggntactagaatagagttgaggtt 60
           |||||||||| |||||||||| |||||||||| ||||| |||||||||||||||||||||
Sbjct: 610 gaaagaaaaacatgagattataaaataaaatgctttggctactagaatagagttgaggtt 551

                                                                       
Query: 61  ttgntctccttgaatgcttatgtctaaggatcatccataccctgagcccacacatctgag 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ttgctctccttgaatgcttatgtctaaggatcatccataccctgagcccacacatctgag 491

                                                                       
Query: 121 tcccagacaggctgactgcatgagataagctgacaggatactccagtaaggtaccaaggt 180
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 490 tcccagacaggctgaatgcatgagataagctgacaggatactccagtaaggtaccaagat 431

                                                                       
Query: 181 gaccagaaagccagtatccagaagcctcctgcaccatcactaccaccaaaaagcagcgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 430 gaccagaaagccagtatccagaagcctcctgcaccatcactaccaccaaaaagcagcctc 371

                                                                       
Query: 241 taccttcaaaagctttgctcattgagctttctctaaaatgcaagaacttgttggagattt 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 370 taccttcaaaagctttgctcattgagctttctctaaaatgcaggaacttgttggagattt 311

                                                                       
Query: 301 tcaatccgaagttcttaggatgaaagagttctggtccttttccagagcaagttctgaagg 360
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tcaatctgaagttcttaggatgaaagagttctggtccttttccagagcaagttctgaagg 251

                                                                       
Query: 361 aagaaaaagaaaccctcgagttagcacctaatacatggggtagggaggggataaataaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||          
Sbjct: 250 aagaaaaagaaaccctcgagttagcacctaatacatggggtagggagggg---------- 201

                                                                       
Query: 421 aaataaataaataaataaataaataaataaataaataaataaggtgctgaaggatgatgc 480
                                 ||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ----------------------ataaataaataaataaataaggtgctgaaggatgatgc 163

                                             
Query: 481 tttaaaactacacagttacatccatttacctcca 514
           ||||||||||||||||||||||||||||||||||
Sbjct: 162 tttaaaactacacagttacatccatttacctcca 129


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)