BAC Information

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BAC

Clone NameMSMg01-334E08
Chromosome15 (Build37)
Map Location 15,889,939 - 15,991,791
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040024, LOC100040033, LOC100040046, EG239341
Downstream geneLOC100040087, LOC624183, LOC100040119, Cdh9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334E08.T7 (MSMg01no334_e08.b1)MSMg01-334E08.TJ (MSMg01no334_e08.g1)
ACCAG449809AG449810
length724719
length of high quality
(start - end)		144 (133 - 276)560 (76 - 635)
definitionCHROMAT_FILE: MSMg01no334_e08.b1 PHD_FILE: MSMg01no334_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:38 2005CHROMAT_FILE: MSMg01no334_e08.g1 PHD_FILE: MSMg01no334_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,991,648 - 15,991,791)(15,889,939 - 15,890,496)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCGAGAAGATCCGCG
GAATTCAGCATATATGCAATAGTTGAGAGTGAAATGTTTCCAATGGCATC
ATGTATTGAATGCACTGTCCCTCCTTATAGAAGCATGTACATAATAGGCA
TTCACACATTATCCTGCTATGTGAACTCTTCCTGTAGAAAATAGAATCCA
CTTCTGAAAGAATACCTAGACCTGCACAACAAATGCAGCAAGGAAGTTCC
CTTTTTCTGCCCTAGTAATGCAGCTTGCTAGTCACACTATGTTNNNNNCC
AATAGCCTCATCCTTCAATGATATTTTCAGTCCCTGGTTCACATCTGGTG
CGACAGATGAGAAATCTTATGGGTGTTTTTCCGGGGTTTCCCTTTAGGGG
GNNNGAACCCTATTTGGGCACCACCAAACCCCCCAAAAGGCCCAAAGGTC
TTCTCCCGTATAATACTTCCNNNCCCANNNGGTCTCGTTGGAACTCTAGG
GGGGTTTTTTCTTCCCCCCCCCTAAAACCCCAAAAAACGGTATAGAATTT
TCTGGGAAAAAAATTACCTTGGGGGGGTCGTNTGGTGTTGTTATTTCTAC
CTTTTCACNNNNCNNCCNNCNNAANAANNTCCCCNTTCACTTTCCGGTTG
TCTTTGAGCTTAGTTTTTTTCTTACAGCTCTCTCTTTTCCACAACATTAC
ATTTATCTCTCCTATTTCCCTTCT

TCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAACAGAAATAAATGTATGTGTGCAT
GGGTGTGTATGGGTGTATATATACATTTATATATAAATTATGTACATATA
AAATATATGTGTATATAATATATTATACATAAATATAAAAGTTATATATA
TAAATAAATGTATTTGTATATGTGTTTTTATTTTTGAATATATACAAATA
TATCTATTTATGTATTCATAATATATTTTATATATTCATATATAAAATAC
ACATATATGATTGACATCAATGTTCTTTGTGAAACAAGCATTCATATATA
TTACAAACCTCACAAAAGAGCAAAAAAGACAATACTTTTAGAAATAATAG
TTGATAGAATCCAAATACAAAATATTGTTGAGATTTATACATAAATATTA
ATATATTAACCTTAAGATCTTAGTTGTGATTATTAGTCAAGATAACATTG
AATCGGAGAAATTCCCAAACCTGAACATATCCTTTCATATTAATATCAGA
TTTCTATTTAACCTATGACTTAACCATGCTGAACCATTAAATTTATATTT
ATTTACTTTTAACATTTTAGTTTATTTTTCTGATATGGAATCAGTAAATA
ATTAATAACACTTTATAAGAGAAATACTATTATATATATGATGAAGAATA
GCATTTCTGCGTTTTACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_e08.b1 MSMg01no334_e08.b1 CHROMAT_FILE:
MSMg01no334_e08.b1 PHD_FILE: MSMg01no334_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:38 2005
         (144 letters)



>mm_chr15_15991448_15991991
          Length = 544

 Score =  279 bits (144), Expect = 7e-80
 Identities = 144/144 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcatgtacataataggcattcacacattatcctgctatgtgaactcttcctgtagaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gcatgtacataataggcattcacacattatcctgctatgtgaactcttcctgtagaaaat 285

                                                                       
Query: 61  agaatccacttctgaaagaatacctagacctgcacaacaaatgcagcaaggaagttccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 agaatccacttctgaaagaatacctagacctgcacaacaaatgcagcaaggaagttccct 225

                                   
Query: 121 ttttctgccctagtaatgcagctt 144
           ||||||||||||||||||||||||
Sbjct: 224 ttttctgccctagtaatgcagctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 544
Length adjustment: 8
Effective length of query: 136
Effective length of database: 536
Effective search space:    72896
Effective search space used:    72896
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no334_e08.g1 MSMg01no334_e08.g1 CHROMAT_FILE:
MSMg01no334_e08.g1 PHD_FILE: MSMg01no334_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:38 2005
         (560 letters)



>mm_chr15_15889739_15890698
          Length = 960

 Score = 1064 bits (550), Expect = 0.0
 Identities = 556/558 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacagaaataaatgtatgtgtgcatgggtgtgtatgggtgtatatatacatttatatata 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacagaaataaatatatgtgtgcatgggtgtgtatgggtgtatatatacatttatatata 260

                                                                       
Query: 61  aattatgtacatataaaatatatgtgtatataatatattatacataaatataaaagttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattatgtacatataaaatatatgtgtatataatatattatacataaatataaaagttat 320

                                                                       
Query: 121 atatataaataaatgtatttgtatatgtgtttttatttttgaatatatacaaatatatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatataaataaatgtatttgtatatgtgtttttatttttgaatatatacaaatatatct 380

                                                                       
Query: 181 atttatgtattcataatatattttatatattcatatataaaatacacatatatgattgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttatgtattcataatatattttatatattcatatataaaatacacatatatgattgac 440

                                                                       
Query: 241 atcaatgttctttgtgaaacaagcattcatatatattacaaacctcacaaaagagcaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcaatgttctttgtgaaacaagcattcatatatattacaaacctcacaaaagagcaaaa 500

                                                                       
Query: 301 aagacaatacttttagaaataatagttgatagaatccaaatacaaaatattgttgagatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagacaatacttttagaaataatagttgatagaatccaaatacaaaatattgttgagatt 560

                                                                       
Query: 361 tatacataaatattaatatattaaccttaagatcttagttgtgattattagtcaagataa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatacataaatattaatatattaaccttaagatcttagttgtgattattagtcaagataa 620

                                                                       
Query: 421 cattgaatcggagaaattcccaaacctgaacatatcctttcatattaatatcagatttct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cattgaatcggagaaattcccaaacctgaacatatcctttcatattaatatcagatttct 680

                                                                       
Query: 481 atttaacctatgacttaaccatgctgaaccattaaatttatatttatttacttttaacat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 681 atttaacctatgacttaaccatgctgaaccattaaatttatatttatttacttttaaaat 740

                             
Query: 541 tttagtttatttttctga 558
           ||||||||||||||||||
Sbjct: 741 tttagtttatttttctga 758


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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