BAC Information

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BAC

Clone NameMSMg01-335F19
Chromosome15 (Build37)
Map Location 67,483,060 - 67,483,528
singlet/doubletsinglet
Overlap genenone
Upstream geneTg, Sla, Wisp1, Ndrg1, LOC100040667, St3gal1
Downstream geneZfat1, LOC100041000
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335F19.T7 (MSMg01no335_f19.b1)MSMg01-335F19.TJ (MSMg01no335_f19.g1)
ACCAG450635AG450636
length705747
length of high quality
(start - end)
336 (271 - 606)565 (71 - 635)
definitionCHROMAT_FILE: MSMg01no335_f19.b1 PHD_FILE: MSMg01no335_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:06 2005CHROMAT_FILE: MSMg01no335_f19.g1 PHD_FILE: MSMg01no335_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTATCACTCCATAGTACAGATCGCGGATTCTTGTCTTTCCAGACCATTT
TTATGGGGTATTGATTTCTGAGTCACCTTCTTGAGTCTTTTATATATGTT
GGAATTAGTCCCTATCTGATTAGGATAGGTAACGATCCTTTCCCATCTGT
TGGTGGTCTTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTT
TGGAGTTTCATAAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGC
CATTGATGTTCTGTTCAGGAAATTTTTCCCCTGTGCCCATATCTTCAAGG
CTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTG
AAGATCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATG
GATCGATTCGCATTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAA
TTGTTGAAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTC
GAAGATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTC
TATTCCATTGGGCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTT
ATCACAATTGCTCTGTAGTAAAGCTTTAGGTCTGGCATGGTGATTCCGCC
AGAAGTTCTTTTATCCTTGAGAAGACTTTTTGCTATCCTAGGTTTTTTGG
TATCN
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTATCCATTAGAAGGGCTCTCCTCCTGGG
AATGCAGTCCCTAAAAGCAGGGGTTATTTCTGTAACTCTGGGCTAGCAAA
CTCTTAACTGANAGGAACTACGGCAGTCTGTCTTCCTTTCTTTTCTCTTT
TGGCACAGATTTTTTTAAATCCCTTTGGAAACAAAGAAATATATGCTGTA
AAATAATCAATGGCTTAAAATACTGGGCAGAAACAGAGATACAAGCAGTT
CTTCTATCACAGGAGTTGCTCCTCCATGATTTTCTGTGCTTCTCTTTGAT
CTGTTAACATGCAAAGCTTTTGGTAGATGGGATCTAAAAATAATTCGTTG
GGCATTTTCTTACCAGAACATGTAATTTTCTAACATGATGCCTTTGGCTG
CTGTACACATAATGATGCTAAGACCAGGGCATTTTCAGAGTTGTAAGCTT
GACTAAATAGGATTGTGATTGTGAGTAATGAAAAGGGAAACCTGATGCTG
CAACCCTTTAATACAGTTGCTCAGGTTGTGGTGACCCCCAGCCACAACAT
TATTTTCATTGCTATTTCATGATTATAATTTTACTACTGTTATGAATTGT
AATATAAACATTTGTTTTCTGATGATGGTCTTATGCAACCCATGTATAAA
GGTCATTGTGACCCCCAAGGGGGATATGACTCCCATACTAAGTACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_f19.g1 MSMg01no335_f19.g1 CHROMAT_FILE:
MSMg01no335_f19.g1 PHD_FILE: MSMg01no335_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:06 2005
         (565 letters)



>mm_chr15_67482860_67483823
          Length = 964

 Score =  859 bits (444), Expect = 0.0
 Identities = 464/471 (98%), Gaps = 3/471 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttatccattagaagggctctcctcctgggaatgcag-tccctaaaagcaggggttattt 59
           ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 669 tttatccattagaagggctctcctcctgggaatgcagct-cctaaaagcaggggttattt 611

                                                                       
Query: 60  ctgtaactctgggctagcaaactcttaactganaggaactacggcagtctgtcttccttt 119
           |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 610 ctgtaactctgggctagcaaactcttaactgaaaggaactacggcagcctgtcttccttt 551

                                                                       
Query: 120 cttttctcttttggcacagatttttttaaatccctttggaaacaaagaaatatatgctgt 179
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 550 cttttctcttttggcacaga-ttttttaaatccctttggaaacaaagaaatatatgctgt 492

                                                                       
Query: 180 aaaataatcaatggcttaaaatactgggcagaaacagagatacaagcagttcttctatca 239
           ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aaagtaatcaatggcttagaatactgggcagaaacagagatacaagcagttcttctatca 432

                                                                       
Query: 240 caggagttgctcctccatgattttctgtgcttctctttgatctgttaacatgcaaagctt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 caggagttgctcctccatgattttctgtgcttctctttgatctgttaacatgcaaagctt 372

                                                                       
Query: 300 ttggtagatgggatctaaaaataattcgttgggcattttcttaccagaacatgtaatttt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ttggtagatgggatctaaaaataattcgttgggcattttcttaccagaacatgtaatttt 312

                                                                       
Query: 360 ctaacatgatgcctttggctgctgtacacataatgatgctaagaccagggcattttcaga 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ctaacatgatgcctttggctgctgtacacataatgatgctaagaccagggcattttcaga 252

                                                              
Query: 420 gttgtaagcttgactaaataggattgtgattgtgagtaatgaaaagggaaa 470
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gttgtaagcttgactaaataggattgtgattgtgagtaatgaaaagggaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 964
Length adjustment: 10
Effective length of query: 555
Effective length of database: 954
Effective search space:   529470
Effective search space used:   529470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)