BAC Information

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BAC

Clone NameMSMg01-335P24
Chromosome15 (Build37)
Map Location 67,953,291 - 68,094,330
singlet/doubletdoublet
Overlap geneZfat1
Upstream geneSt3gal1
Downstream geneLOC100041000, EG665945, EG633752, Khdrbs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335P24.T7 (MSMg01no335_p24.b1)MSMg01-335P24.TJ (MSMg01no335_p24.g1)
ACCAG451124AG451125
length728736
length of high quality
(start - end)		582 (36 - 617)466 (69 - 534)
definitionCHROMAT_FILE: MSMg01no335_p24.b1 PHD_FILE: MSMg01no335_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:57 2005CHROMAT_FILE: MSMg01no335_p24.g1 PHD_FILE: MSMg01no335_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,953,291 - 67,953,868)(68,093,865 - 68,094,330)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATAC
TGCCTTTATGGGGCAGTCCGTGGGCAACAGCTACGAAAGAGAGGGGCCAA
TCAAAGTAAGAAATGGTCTACAAACCAAATCCACACTGAGAGCCAAGTCC
ATCCTTCATGTGGCAAAGCAGATAAATTGCCACATGAGAATTCCAATGCC
CTTTAGTTCCCATGCAGAGTCCTTGGAAGAATTTCTAATAAGAAAAAATG
GCAAACAGGTATGCCAGGGGACAAGGGGTGTACAGAGGAGGCCAAATGAG
AGAGCAATCCCCAAGCTACAGAGTTTTATCAAAATCTCAATTCTTGACAT
TGGAAGGCTTGGGGGAGGGCATCAGGTTGCTCTGACAGAGTGAGCTCAGC
ACTGGGCTGAGCAGATGGCTCCCAGGTGAGCAGTTCTGGGGCTAGAAAGA
TAACGATTGCCTTCCCCCGGCTTACTTCTGCTCCTTAAACCCTTTCCATC
ACATCATGAAATCCCTTGCTGGGGTACTCCATCCTAAACTACATTCACTG
AACCACACTTGGACCTTCCTAGCAAATCCAATTCAAGGTTGAGAAGGCAT
GATAGTGCCAGTCTGGGAACACTCCAGGGGCTGTGGTACCAAGAAGGCAC
ACCAACCACTGCTAAGGCCCTGCTGCACATGAAGTCTGGCTGCATCTCCA
ATGCTTCAAGCCTGAAGCATTCATATCT

ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTCTCCTCCCATGTCCTATCTTCTATTTCCT
GCCTAAGCCATAGGCCACAGGCTTTTTAGTTGACAGGTGATACATCCATA
CAACCAATACACAAGCTGTTCTCTTTACAGTCAGTCCTAACGTCAAGATG
GCTCAGTGAGTAACCAACCTGCTATGCAAGCTGGAGAACCTGAGTTTGGA
TGCCCCAGCCCTAATGTAAGAAAGTTAGTCTCAACAGTATGTGTGAAAAG
TCAGCCCTGAGGGGATGGAACAAGGCAGATGACAGGATTCTGCTTCAAAA
AACAAAACAAAACATCAAGCCAGCCTGATTTTGCTTCTGTCCTTGGGGTG
GGACTTAAGGAATGAAACCTTGGTCAGTGGTAAGTGCAGTGTGTATGGGG
GTAGGACAGAACAAGACAACTTTCTCTGAGATGGTTTTCTGTGAAACAGC
TTTTTTATTGACGGTAACAAGAGCTATATAAACCTTGGGGTTTGGGTAGG
TGTTTTCAGGGTGAGCGTGCATTACTGGCTGGTAATGATGCTCTGGTAAT
GCTTCCTCCGACTGATTATAAATGCTGGACCTGTCTTTCAACGGAGCTGC
GTCTCTTGCCCCCACTTTTCTCTGTATTATTCCCCCGCTCATTAAAGCCC
TTAATTTGTTCTCTTTTTCACCTCCTTTCTCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_p24.b1 MSMg01no335_p24.b1 CHROMAT_FILE:
MSMg01no335_p24.b1 PHD_FILE: MSMg01no335_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:57 2005
         (582 letters)



>mm_chr15_67953087_67954068
          Length = 982

 Score = 1033 bits (534), Expect = 0.0
 Identities = 567/578 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctatactgcctttatggggcagtccgtgggcaacagctacgaaagagaggggcca 64
           |||||||||||||||   ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatactgcccacatgggacagtccgtgggcaacagctacgaaagagaggggcca 264

                                                                       
Query: 65  atcaaagtaagaaatggtctacaaaccaaatccacactgagagccaagtccatccttcat 124
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 265 atcaaagtaagaaatggtctacaaaccaaatccacactgagaaccaagtccatccttcat 324

                                                                       
Query: 125 gtggcaaagcagataaattgccacatgagaattccaatgccctttagttcccatgcagag 184
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 325 gtggcaaagcagataaattgccgcatgagaattccaatgccctttagttcccatgcagtg 384

                                                                       
Query: 185 tccttggaagaatttctaataagaaaaaatggcaaacaggtatgccaggggacaaggggt 244
           |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 tccttggaagaagttctaataagaaaaaatggcaaacaggtatgccagggaacaaggggt 444

                                                                       
Query: 245 gtacagaggaggccaaatgagagagcaatccccaagctacagagttttatcaaaatctca 304
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtacagaggaggtcaaatgagagagcaatccccaagctacagagttttatcaaaatctca 504

                                                                       
Query: 305 attcttgacattggaaggcttgggggagggcatcaggttgctctgacagagtgagctcag 364
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 505 attcttgacattggaaggcttgggggagggcatcaggttgctgtgacagagtgagctcag 564

                                                                       
Query: 365 cactgggctgagcagatggctcccaggtgagcagttctggggctagaaagataacgattg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cactgggctgagcagatggctcccaggtgagcagttctggggctagaaagataacgattg 624

                                                                       
Query: 425 ccttcccccggcttacttctgctccttaaaccctttccatcacatcatgaaatcccttgc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccttcccccggcttacttctgctccttaaaccctttccatcacatcatgaaatcccttgc 684

                                                                       
Query: 485 tggggtactccatcctaaactacattcactgaaccacacttggaccttcctagcaaatcc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tggggtactccatcctaaactacattcactgaaccacacttggaccttcctagcaaatcc 744

                                                 
Query: 545 aattcaaggttgagaaggcatgatagtgccagtctggg 582
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aattcaaggttgagaaggcatgatagtgccagtctggg 782


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no335_p24.g1 MSMg01no335_p24.g1 CHROMAT_FILE:
MSMg01no335_p24.g1 PHD_FILE: MSMg01no335_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:57 2005
         (466 letters)



>mm_chr15_68093471_68094336
          Length = 866

 Score =  832 bits (430), Expect = 0.0
 Identities = 457/466 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctcctcccatgtcctatcttctatttcctgcctaagccataggccacaggcttttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 tttctcctcccatgtcctatcttctatttcctgcctaagccataggccacaggcttttta 801

                                                                       
Query: 61  gttgacaggtgatacatccatacaaccaatacacaagctgttctctttacagtcagtcct 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 gttgacaggtgatgcatccatacaaccaatacacaagctgttctctttacagtcagtcct 741

                                                                       
Query: 121 aacgtcaagatggctcagtgagtaaccaacctgctatgcaagctggagaacctgagtttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aacgtcaagatggctcagtgagtaaccaacctgctatgcaagctggagaacctgagtttg 681

                                                                       
Query: 181 gatgccccagccctaatgtaagaaagttagtctcaacagtatgtgtgaaaagtcagccct 240
           |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| 
Sbjct: 680 gatgccccagccctaatgtaagaaagttaggctcaacagtatgtgtgagaagtcagcccc 621

                                                                       
Query: 241 gaggggatggaacaaggcagatgacaggattctgcttcaaaaaacaaaacaaaacatcaa 300
           |||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 620 gagggggtggaacaaggcagatgacaggattctgcttcaaaaaccaaaacaaaacaccaa 561

                                                                       
Query: 301 gccagcctgattttgcttctgtccttggggtgggacttaaggaatgaaaccttggtcagt 360
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gccagcctgattttacttctgtccttggggtgggacttaaggaatgaaaccttggtcagt 501

                                                                       
Query: 361 ggtaagtgcagtgtgtatgggggtaggacagaacaagacaactttctctgagatggtttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ggtaagtgcagtgtgtatgggggtaggacagaacaagacaactttctctgagatggtttt 441

                                                         
Query: 421 ctgtgaaacagcttttttattgacggtaacaagagctatataaacc 466
           ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 440 ctgtgaaacagcttttttattgagggtaacaagagctatataaacc 395


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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