Query= MSMg01no336_b09.b1 MSMg01no336_b09.b1 CHROMAT_FILE:
MSMg01no336_b09.b1 PHD_FILE: MSMg01no336_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:04 2005
(558 letters)
>mm_chr15_49519570_49520527
Length = 958
Score = 940 bits (486), Expect = 0.0
Identities = 534/554 (96%), Gaps = 9/554 (1%)
Strand = Plus / Minus
Query: 5 gaattctgaattcagcaaactaactgagttaattgtaacattttttttcatgatacccat 64
|||| |||| |||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 936 gaatcctgacttcagcaaactaactgagttaattgtaaca-tttttttcatgacacccat 878
Query: 65 gaagtcattttttcctgcttcaattggaagataaaaagttaaagagtgatatatatatat 124
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 877 gaagtcattttttcctgcttcaattggaagataaaaagttaaagagtg--atatatatat 820
Query: 125 atatatatatatatatatatatgaagagattaatagatatgtatatatatgaatacacag 184
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 819 atatatatatatatatatatatgaagagattaatatatatatatatatatgaatacacag 760
Query: 185 agagagtgagagagattataaataatcaatacctttaggaaagtatatttaataaatatg 244
| ||||||||||||| |||||||||||||||| ||| ||||||||||||||||||
Sbjct: 759 a------gagagagattatatataatcaatacctttaagaaggtatatttaataaatatg 706
Query: 245 ccacattttaaataaagatcaaataaaaatgatgggttctggatgatttgctgattaaca 304
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 705 ccacattttaaataaagatcaaataaaaatgatgggttctggatgatttactgattaaca 646
Query: 305 catgtagtaaatgaatattcaaatactttcatactttcatagaactcttctggttcagat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 645 catgtagtaaatgaatattcaaatactttcatactttcatagaactcttctggttgagat 586
Query: 365 gctttcatatctctgcttgcacatgacattactattcttatgactatatcattctattta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 gctttcatatctctgcttgcacatgacattactattcttatgactatatcattctattta 526
Query: 425 atatccgcacagaattctaggactctcagggattttatttctgttttctgaacaaaacac 484
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 atatcctcacagaattctaggactctcagggattttatttctgttttctgaacaaaacac 466
Query: 485 tttcataagagtcaatataacaaatatttgtaaacattttactcataaatatgccataat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tttcataagagtcaatataacaaatatttgtaaacattttactcataaatatgccataat 406
Query: 545 tatatgactgagtt 558
||||||||||||||
Sbjct: 405 tatatgactgagtt 392
Score = 62.6 bits (32), Expect = 7e-14
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 113 atatatatatatatatatatatatatatatat 144
||||||||||||||||||||||||||||||||
Sbjct: 798 atatatatatatatatatatatatatatatat 829
Score = 62.6 bits (32), Expect = 7e-14
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 115 atatatatatatatatatatatatatatatat 146
||||||||||||||||||||||||||||||||
Sbjct: 798 atatatatatatatatatatatatatatatat 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 111
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 3
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space: 519504
Effective search space used: 519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_b09.g1 MSMg01no336_b09.g1 CHROMAT_FILE:
MSMg01no336_b09.g1 PHD_FILE: MSMg01no336_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:04 2005
(529 letters)
>mm_chr15_49362082_49363010
Length = 929
Score = 948 bits (490), Expect = 0.0
Identities = 518/529 (97%), Gaps = 3/529 (0%)
Strand = Plus / Plus
Query: 1 accttataaaattcataaacaatacaggtacccaaaaggattagcatcagtattacttgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accttataaaattcataaacaatacaggtacccaaaaggattagcatcagtattacttgc 260
Query: 61 ttcgatatgctcagtaaattttagcatccattttcattcacaagacatcagtctttgctc 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcgatatgttcagtaaattttagcatccattttcattcacaagacatcagtctttgctc 320
Query: 121 ttttttgaatctcaaattcttttctgatggtgagaggcttgtggctagagtcctttgtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttttgaatctcaaattcttttctgatggtgagaggcttgtggctagagtcctttgtga 380
Query: 181 tttctttctagtttaccttccccaatccctatttcatgctctattttcctcctttttttt 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 tttctttctagtttaccttccccaatccctatttcatgctctaatttcctcctttttttt 440
Query: 241 ttttttt---caaacaaggtttctctgtgtagccctgactgtcctggaactcactctgta 297
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttttttttccagacaaggtttctctgtgtagccctgactgtcctggaactcactctgta 500
Query: 298 aaacaggctggcttcatactcaaaaatccttgtgcctctgcctcccaagtgctgggattg 357
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaacaggctggcttcatactcagaaatccttgtgcctctgcctcccaagtgctgggattg 560
Query: 358 aaggcgtgagccaccactacctggcaaagttatctatctccttattgcttcttttggtgt 417
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 aaggcgtgagccaccactacctggcagagttatctatctccttattgcttcttttggtgt 620
Query: 418 catctttcctcctctcctgccttttttctctctcgtcccttttcttcattttctcctcct 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catctttcctcctctcctgccttttttctctctcgtcccttttcttcattttctcctcct 680
Query: 478 ttcctccatctacccctcagncccttccttgttcctttttcatttcttt 526
||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 681 ttccttcatctacccctcagtcccttccttgtccctttttcatttcttt 729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space: 476961
Effective search space used: 476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
