BAC Information

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BAC

Clone NameMSMg01-337E22
Chromosome15 (Build37)
Map Location 12,417,262 - 12,465,239
singlet/doubletdoublet
Overlap genePdzd2
Upstream geneLOC100039772, Npr3, LOC381002, Sub1, LOC100040027, Zfr, LOC100040052, LOC100040066, Mtmr12, LOC100039846, Golph3
Downstream geneLOC100040109, 6030458C11Rik, Rnasen, Cdh6, LOC100039907, LOC666686, LOC239338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337E22.T7 (MSMg01no337_e22.b1)MSMg01-337E22.TJ (MSMg01no337_e22.g1)
ACCAG452113AG452114
length782785
length of high quality
(start - end)		514 (37 - 550)469 (68 - 536)
definitionCHROMAT_FILE: MSMg01no337_e22.b1 PHD_FILE: MSMg01no337_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:39 2005CHROMAT_FILE: MSMg01no337_e22.g1 PHD_FILE: MSMg01no337_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,417,262 - 12,417,772)(12,464,771 - 12,465,239)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGGAGAGGTGA
GTTTGGAAGAGAAACATAGTGGGCTATCCAGAAGAAATAGGAACAGGGGG
TACGAAGTAGGATGGAAATGCTTAAGGTACAATGTACACATCTGTCTTAA
GGTTTCCATTGCTGGGACACAGCACCATGAATAACATGAAAGTTGAGGAG
GAAAGGGTTTGTCTGCTTATACTTCCACAGCACCGCTCATCACTGAAGGA
ACTCAGGACAGGAACTCAGACAAGGTATGAACCTGGGTACAGGAACAGAT
GCAGAGGACATGGAAGGGTGCTGCTTATTGGCTTGCTCGCCATGGCTCGC
TCAGCCTGCTTTCTTACAGAACCCAGGACCACCAGCCCAGGGATGGCACT
ACCCAAATTGGGCCTATCAACTGCTAATTTAAAAAATGCCTTACAGCCAG
GTCTCATAGAGGTATTTTCTCAGTAAGCTTCCCTTCTTTCAGATAGCTCT
AGTTTGTGTGTCAAGTTGACATAAGACTAGGCAGCGTAACATCTAAGAGA
GTTTCAGAGAATAATTTANNAGAATATCTTATTATATATGATAATATATA
TAATATATATATAATGAAAGCAGCNGGATATATGATGAAAATGGTCCCNA
AGTTTGTCCAGGCGAATGGGAACCCCNGAAAACCCCCAGGGACCCCGATA
TGCCCAATCCGCTTCTCAACTTTTATGTTCCGAAGTTATTTATTTTTAAC
TTTAAAACCCTGGGGCTGGGCTTCAAAACCCT

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTATTTTCCCCTGAAATGTGTTCTCTCATAGATA
AACTCAGGATGCATTAAATTCCAACATGTCAGTCTCAACTAACTTATCAT
CGACTCTTCCTGCCCCCAGAGAAGCTCCCTTGCATCTGTGTTATAAAATT
TGGGCTTGTGTTTAGCTAAACAGGGAGAAGCAGAGCGAGGGGGATGTACA
TAGAAACGACTTGAGGTTCTGTACTGCACAGGGATATAGTTTATGTGCCT
GTGGGCCCTGGGGAGACAGAGAAAGACTGAGATTTAGCAAATCATGTCAC
ATAGTTGCTGTGAGTAGAAACTCCACCGTCTATAGAGCAGAACAGAAGCT
AGGAATATCAGTGAATACGGATGGCATGGTTCTCATCCAAAGCTCTACAC
ACAGGACAGATAGGACAGGCTGGTAACTTAGGTAGGGATCTCAAGGGCAG
TGCTGTCTCCTTTGGGAAATCTGACTCCTTTCTTTTAGATCATCACCTAC
TTTGAGGGCTGCCCACATTCTTGGAAGCAGCTTTGTTCATCTACTGATTT
AATATTCCCGTCCGGCCAAGGGGGGAGTACATTTTCTGTAATCCCCGGTT
TTGGAAAGTGAGGCAGAATGGTTGTTCTCTTCCGCCCTGAACATTTTGGG
GGTCTTGGCCACCCCGAATTCCCCGGAAAATATTTTTTTTTTTTTTTTAT
GAAAAATCTGTTTTCCTCCCCCCCGGGGGGTGGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_e22.b1 MSMg01no337_e22.b1 CHROMAT_FILE:
MSMg01no337_e22.b1 PHD_FILE: MSMg01no337_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:39 2005
         (514 letters)



>mm_chr15_12417059_12417972
          Length = 914

 Score =  965 bits (499), Expect = 0.0
 Identities = 508/511 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   gggagaggtgagtttggaagagaaacatagtgggctatccagaagaaataggaacagggg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gggagaggtgagtttggaagagaaacatagtgggctatccagaagaaataggaacagggg 263

                                                                       
Query: 64  gtacgaagtaggatggaaatgcttaaggtacaatgtacacatctgtcttaaggtttccat 123
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 264 gtacgaagtaggatggaaaggcttaaggtacaatgtacacatctgtcttaaggtctccat 323

                                                                       
Query: 124 tgctgggacacagcaccatgaataacatgaaagttgaggaggaaagggtttgtctgctta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgctgggacacagcaccatgaataacatgaaagttgaggaggaaagggtttgtctgctta 383

                                                                       
Query: 184 tacttccacagcaccgctcatcactgaaggaactcaggacaggaactcagacaaggtatg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tacttccacagcaccgctcatcactgaaggaactcaggacaggaactcagacaaggtatg 443

                                                                       
Query: 244 aacctgggtacaggaacagatgcagaggacatggaagggtgctgcttattggcttgctcg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aacctgggtacaggaacagatgcagaggacatggaagggtgctgcttattggcttgctcg 503

                                                                       
Query: 304 ccatggctcgctcagcctgctttcttacagaacccaggaccaccagcccagggatggcac 363
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ccgtggctcgctcagcctgctttcttacagaacccaggaccaccagcccagggatggcac 563

                                                                       
Query: 364 tacccaaattgggcctatcaactgctaatttaaaaaatgccttacagccaggtctcatag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tacccaaattgggcctatcaactgctaatttaaaaaatgccttacagccaggtctcatag 623

                                                                       
Query: 424 aggtattttctcagtaagcttcccttctttcagatagctctagtttgtgtgtcaagttga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aggtattttctcagtaagcttcccttctttcagatagctctagtttgtgtgtcaagttga 683

                                          
Query: 484 cataagactaggcagcgtaacatctaagaga 514
           |||||||||||||||||||||||||||||||
Sbjct: 684 cataagactaggcagcgtaacatctaagaga 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no337_e22.g1 MSMg01no337_e22.g1 CHROMAT_FILE:
MSMg01no337_e22.g1 PHD_FILE: MSMg01no337_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:39 2005
         (469 letters)



>mm_chr15_12464571_12465439
          Length = 869

 Score =  845 bits (437), Expect = 0.0
 Identities = 461/469 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattttcccctgaaatgtgttctctcatagataaactcaggatgcattaaattccaacat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 669 tattttcccctgaaatgtgttctctcatagataaactcaggatgcattaaatgccaacat 610

                                                                       
Query: 61  gtcagtctcaactaacttatcatcgactcttcctgcccccagagaagctcccttgcatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 609 gtcagtctcaactaacttatcatcgactcttcctgcccccagagaagctccattgcatct 550

                                                                       
Query: 121 gtgttataaaatttgggcttgtgtttagctaaacagggagaagcagagcgagggggatgt 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gtgttataaaatttggggttgtgtttagctaaacagggagaagcagagcgagggggatgt 490

                                                                       
Query: 181 acatagaaacgacttgaggttctgtactgcacagggatatagtttatgtgcctgtgggcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 acatagaaacgacttgaggttctgtactgcacagggatatagtttatgtgcctgtgggcc 430

                                                                       
Query: 241 ctggggagacagagaaagactgagatttagcaaatcatgtcacatagttgctgtgagtag 300
           |||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 429 ctggggagaccgagaaagacggagatttagcaaatcatgtcacatagttgccgtgagtag 370

                                                                       
Query: 301 aaactccaccgtctatagagcagaacagaagctaggaatatcagtgaatacggatggcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaactccaccgtctatagagcagaacagaagctaggaatatcagtgaatacggatggcat 310

                                                                       
Query: 361 ggttctcatccaaagctctacacacaggacagataggacaggctggtaacttaggtaggg 420
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 agttctcatccaaagctctacacacaggacagataggacaggctggtaacttaggtaggg 250

                                                            
Query: 421 atctcaagggcagtgctgtctcctttgggaaatctgactcctttctttt 469
           ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 249 atctcaagggcagtgctgtctcctttgggaagtctgactcctttctttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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