Query= MSMg01no338_b24.b1 MSMg01no338_b24.b1 CHROMAT_FILE:
MSMg01no338_b24.b1 PHD_FILE: MSMg01no338_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:41 2005
(600 letters)
>mm_chr15_88041243_88042243
Length = 1001
Score = 1093 bits (565), Expect = 0.0
Identities = 589/597 (98%), Gaps = 1/597 (0%)
Strand = Plus / Plus
Query: 5 gaattctttatacttccgccttacaaatgaatgagcaggttattcacatctgaagcacta 64
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttatacgactgccttacaaatgaatgagcaggttattcacatctgaagcacta 264
Query: 65 tgtgtatattacagtaaaaattactaaaacattctagtctgaaacactcacccgagatac 124
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtgtatattacggtaaaaattactaaaacattctagtctgaaacactcacccgagatac 324
Query: 125 acatcacccagctcctccatcgcattaacaggatgctccagaggagcctaatcaatgtgg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acatcacccagctcctccatcgcattaacaggatgctccagaggagcctaatcaatgtgg 384
Query: 185 ataaaaccaaatgtgcatccaagaagtcacagagaggtgaaagggaggctgagagagccc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataaaaccaaatgtgcatccaagaagtcacagagaggtgaaagggaggctgagagagccc 444
Query: 245 acactggtgcctccagcagaagtctatgatctggctgagcatagatctgtcccttcaagg 304
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 445 acactggtgcctccagcagaagtctgtgatctggctgagcatagatctgtcccttcaagg 504
Query: 305 ctctgcatggcttctgacctgagctcagcaccagcagcccaacatctccccctcatagtg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctctgcatggcttctgacctgagctcagcaccagcagcccaacatctccccctcatagtg 564
Query: 365 tctcctgtgcctgcttttcagggtctctggaaggtcctatggaatgctgcggtgaccttt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctcctgtgcctgcttttcagggtctctggaaggtcctatggaatgctgcggtgaccttt 624
Query: 425 aacatggtgctgtgactgtaacaaaggcctctggggtttcttgagccatgagagagccaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aacatggtgctgtgactgtaacaaaggcctctggggtttcttgagccatgagagagccaa 684
Query: 485 ggatgcctctctagaatttcagatttggtttttatcctcgt-gggacccaaagttcttat 543
||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct: 685 ggatgcctctctagaatttcagatttggtttttatccacatagggacccaaagttcttat 744
Query: 544 aaagactccattttggagctggggagatatctcagcagttaggggcactccttgctc 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aaagactccattttggagctggggagatatctcagcagttaggggcactccttgctc 801
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1001
Length adjustment: 10
Effective length of query: 590
Effective length of database: 991
Effective search space: 584690
Effective search space used: 584690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no338_b24.g1 MSMg01no338_b24.g1 CHROMAT_FILE:
MSMg01no338_b24.g1 PHD_FILE: MSMg01no338_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:41 2005
(590 letters)
>mm_chr15_88227175_88228164
Length = 990
Score = 1125 bits (582), Expect = 0.0
Identities = 588/590 (99%)
Strand = Plus / Minus
Query: 1 aatttactaatatccttcttaggattttaactggcactcatgagaaaaatgggtctgctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 aatttactaatatccttcttaggattttaactggcactcatgagaaaaatgggtctgctt 731
Query: 61 tggaagtggactggacaccttccctgcagccctcccctctttcctgcggaggctgtggga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 tggaagtggactggacaccttccctgcagccctcccctctttcctgcggaggctgtggga 671
Query: 121 ccttcctgctgtgcacatttgaaggaatcaggctttgcccacagaactatctgcctggca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ccttcctgctgtgcacatttgaaggaatcaggctttgcccacagaactatctgcctggca 611
Query: 181 gagttgtgtgggaaattttgcttgcccaatatgcaagacttcagattctccagttttcct 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 610 gagttgtgtgggaaattttgcttgcccgatatgcaagacttcagattctccagttttcct 551
Query: 241 ctctcggcctagtggtcagtgctcagaaattgtttttctcttttgtttatttcgtccaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ctctcggcctagtggtcagtgctcagaaattgtttttctcttttgtttatttcgtccaca 491
Query: 301 ttgttatcctgactgcctgtgttcatcccctccttctcttcaaatctgcctggtgttttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ttgttatcctgactgcctgtgttcatcccctccttctcttcaaatctgcctggtgttttc 431
Query: 361 tgggtccttagcggcgatgccagctttcagccctgctttgctgagccacctctttcctct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tgggtccttagcggcgatgccagctttcagccctgctttgctgagccacctctttcctct 371
Query: 421 ttgtcttacccatgctggtgagctggcagaagcagactttacacagagcctgctcagacc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ttgtcttacccatgctggtgagctggcagaagcagactttacacagagcctgctcagacc 311
Query: 481 tggaggatgctctctggtagctagctgttttctctttctccttctcattggcttctgcat 540
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 310 tggaggatgctctctggtagctggctgttttctctttctccttctcattggcttctgcat 251
Query: 541 cctttgtccaactgtccgattgacctgtcacccattctttgtaattaaga 590
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 cctttgtccaactgtccgattgacctgtcacccattctttgtaattaaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
