Query= MSMg01no338_i14.b1 MSMg01no338_i14.b1 CHROMAT_FILE:
MSMg01no338_i14.b1 PHD_FILE: MSMg01no338_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:11 2005
(665 letters)
>mm_chr15_30908146_30909210
Length = 1065
Score = 1085 bits (561), Expect = 0.0
Identities = 564/565 (99%)
Strand = Plus / Minus
Query: 101 ttgtgatgtaaataaattcacggtgcaaactctcccacaagggatatctgagccacgaat 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1065 ttgtgatgtaaataaattcacggtgcaaactctcccacaagggatatctgagccacgaat 1006
Query: 161 ggaaactctttctaccataaaagcatagatacttatgtagtcattaaatggtatagtgcc 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 ggaaactctttctaccataaaagcatagatacttatgtagtcattaaatggtatagtgcc 946
Query: 221 aggatatgggaatatgcttagccatgggtatgaaatactgaaaagtaattcaaagtgtga 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945 aggatatgggaatatgcttagccatgggtatgaaatactgaaaagtaattcaaagtgtga 886
Query: 281 attaaaaataatttatttaagcctgtcacagttttaactgcttcacattactaagcagag 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 attaaaaataatttatttaagcctgtcacagttttaactgcttcacattactaagcagag 826
Query: 341 ccctcagtttagattaaagggagttcagaaattttgtgtttaagggaggtaatatcaaaa 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 ccctcagtttagattaaagggagttcagaaattttgtgtttaagggaggtaatatcaaaa 766
Query: 401 ctacagggagaatgaagattgagatgaaccgtgggacgaaattcagatttaatggacggt 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 ctacagggagaatgaagattgagatgaaccgtgggacgaaattcagatttaatggacggt 706
Query: 461 ctgggggaagttcaggtatggctgcatattttatccacctttcaggaagcagagaagcta 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 ctgggggaagttcaggtatggctgcatattttatccacctttcaggaagcagagaagcta 646
Query: 521 gagaaagaggcccaggtcctgagaaaagactcaggacccatgtcaagatatttaggctct 580
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 645 gagaaagaggcccaggtcctgagaaaagagtcaggacccatgtcaagatatttaggctct 586
Query: 581 gtcctgagggccatggggggcccctaagtcatgaatcgcattgaccctttagaaagttta 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 gtcctgagggccatggggggcccctaagtcatgaatcgcattgaccctttagaaagttta 526
Query: 641 ctcactcctgtagtcctctggacag 665
|||||||||||||||||||||||||
Sbjct: 525 ctcactcctgtagtcctctggacag 501
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no338_i14.g1 MSMg01no338_i14.g1 CHROMAT_FILE:
MSMg01no338_i14.g1 PHD_FILE: MSMg01no338_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:11 2005
(556 letters)
>mm_chr15_30868625_30869580
Length = 956
Score = 917 bits (474), Expect = 0.0
Identities = 542/578 (93%), Gaps = 22/578 (3%)
Strand = Plus / Plus
Query: 1 atttattctttctgtgcatcagtcagcatttagcatgaagtattctggctcattgagcca 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 179 atttattctttctgtgcatcagtcagcatttagcatgaagtattctggctcactgagcca 238
Query: 61 tggtctactgtttcagccagtcctccaagcaagcaaacagtatttactttctagtataaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tggtctactgtttcagccagtcctccaagcaagcaaacagtatttactttctagtataaa 298
Query: 121 tatgctaaaatacaat-------------aagaggccaca---------gattataaagg 158
|||||||||||||||| |||||| | | |||||||||||
Sbjct: 299 tatgctaaaatacaattataaagattataaagaggttataaaggagaaagattataaagg 358
Query: 159 agaaaggacattcagtgtagcgctcacgaaaagactcttggatgggagctaatcatggaa 218
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 359 agaaaggacattcagtgtagcgctcacgaaaagactcttggatgggagctaatcgtagaa 418
Query: 219 acaccttcaagatctgtgcaagccagagagcaccagataccacgcccgtggtggcattca 278
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 419 acaccttcaagatctgtgcaagccagggagcaccagataccacgcccgtggtggcattca 478
Query: 279 gcaggaagaggggcatgccttatagctggcaactgaacaaggaaagtttgagggctggca 338
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gcaggaagaggggcgtgccttatagctggcaactgaacaaggaaagtttgagggctggcg 538
Query: 339 ctgtgcaccatgcaggggtaaggagctggattgctcctctagctacggagacccagccca 398
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 539 ctgtgcaccatgccggggtaaggaactggattgctcctctagctacggagacccagccca 598
Query: 399 gcctagggtaacatcagagtgtttcctgggtgtggattggattctcggctgtatggaagg 458
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 599 gcctagggtgacatcagagtgtttcctgggtgtggattggattctcagctgtatggaagg 658
Query: 459 agcagggtctggaaggcttgactgcagagtcaggaaggagacctcatgccctggtccagg 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 agcagggtctggaaggcttgactgcagagtcaggaaggagacctcatgccctggtccagg 718
Query: 519 gctataggagaagaacacctgggaaaggaaaatgtacg 556
||||||||||||||||||||||||||||||| ||||||
Sbjct: 719 gctataggagaagaacacctgggaaaggaaattgtacg 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
