Query= MSMg01no338_i16.b1 MSMg01no338_i16.b1 CHROMAT_FILE:
MSMg01no338_i16.b1 PHD_FILE: MSMg01no338_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:11 2005
(379 letters)
>mm_chr15_28192869_28193647
Length = 779
Score = 654 bits (338), Expect = 0.0
Identities = 371/392 (94%), Gaps = 17/392 (4%)
Strand = Plus / Minus
Query: 1 gtcatcctgagggagctgacaaagagccatgctactcatttcctccaggatggcgtggat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gtcatcctgagggagctgacaaagagccatgctactcatttcctccaggatggcgtggat 489
Query: 61 gcggaactcaatcaagtcattgacccggtcaagcagcagctccaggtcctctttgg---- 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gcggaactcaatcaagtcattgacccggtcaagcagcagctccaggtcctctttgggaaa 429
Query: 117 ---------aaaaaaaaaaatgacaggttagtgaagcatttcctcagacatggacacaag 167
||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aaaaaaaaaaaaaaaaaaaaagacaggttagtgaagcatttcctcagacatggacacaag 369
Query: 168 attggttgatagcggggacatcagggttaaagatgcttgggttatacatgtctgtcttag 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 attggttgatagcggggacatcagggttaaagatgcttgggttatacatgtctgtcttag 309
Query: 228 ttacctttctattactgtaataagacactatgaccatagcaacttatagaagaaagtgtt 287
|||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||
Sbjct: 308 ttacctttctattactgtaaaaagacactctgaccatagcaacttatagaag----tgtt 253
Query: 288 taatgagggctttcttacagtttcagagagtgagttggtgattattgtggtggggaacat 347
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 252 taatgagggctttcttacagtttcagagagtgagttggtgattatcgtggtggggaacat 193
Query: 348 ggaaaaaaggtagtcgggaatagtgctggagc 379
||||||||||||||||||||||||||||||||
Sbjct: 192 ggaaaaaaggtagtcgggaatagtgctggagc 161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space: 284900
Effective search space used: 284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no338_i16.g1 MSMg01no338_i16.g1 CHROMAT_FILE:
MSMg01no338_i16.g1 PHD_FILE: MSMg01no338_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:11 2005
(565 letters)
>mm_chr15_28004216_28005181
Length = 966
Score = 1015 bits (525), Expect = 0.0
Identities = 557/569 (97%), Gaps = 4/569 (0%)
Strand = Plus / Plus
Query: 1 atccttcacaccgcacccagggatgaggagtggggaccttgctctgccagggagatcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 atccttcacaccgcacccagggatgaggagtggggaccttgctctgccagggagatcctg 257
Query: 61 gagcctctgcgtgggagctcaggtgagagcaagctctgttctcttggccatgcccatctg 120
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gagcctttgcgagggagctcaggtgagagcaagctctgttctcttggccatgcccatctg 317
Query: 121 aaatggaactccttccatgctgtgctggcaagagggagcagatggtggagtaagaaccac 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aaatggaactccttctatgctgtgctggcaagagggagcagatggtggagtaagaaccac 377
Query: 181 acattcttgctctgctcactagggcttatttaatccattggatatgtagtcccttatttg 240
||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||
Sbjct: 378 acattcttgctctgctcactagggcttatttaacccattggatatgtagttctttatttg 437
Query: 241 cttaggatgctgtccagaaataataataataataa---acattattagtaattattatta 297
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 438 cttaggatgctgtccagaaataataataataataataaacattattagcaattattatta 497
Query: 298 gtgctgaggatgaaacttatgacctcacagggactaggcgaagtagcctacctttaaaca 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gtgctgaggatgaaacttatgacctcacagggactaggcgaagtagcctacctttaaaca 557
Query: 358 actccccaaacccgttcctaacatttgaaatggatttttttaaaaattgaattttgccag 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 actccccaaacccgttcctaacatttgaaatggatttttttaaaaattgaattttgccag 617
Query: 418 ctgatgagcggctttttta-aaatctatcattactaatttatttattattacatacatgg 476
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ctgatgagcggcttttttttaaatctatcattactaatttatttattattacatacatgg 677
Query: 477 catcctcagccatgtatgtaaatgccaaataacagtagttaactactatctccgtggtgt 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 catcctcagccatgtatgtaaatgccaaataacagtagttaactactatctccgtggtgt 737
Query: 537 tcattctatcattctataaactctgagat 565
|||||||||||||||||||||||||||||
Sbjct: 738 tcattctatcattctataaactctgagat 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 966
Length adjustment: 10
Effective length of query: 555
Effective length of database: 956
Effective search space: 530580
Effective search space used: 530580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
