BAC Information

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BAC

Clone NameMSMg01-338J05
Chromosome15 (Build37)
Map Location 16,662,436 - 16,662,952
singlet/doubletsinglet
Overlap genenone
Upstream geneEG239341, LOC100040087, LOC624183, LOC100040119
Downstream geneCdh9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338J05.T7 (MSMg01no338_j05.b1)MSMg01-338J05.TJ (MSMg01no338_j05.g1)
ACCAG453071AG453072
length747761
length of high quality
(start - end)		544 (45 - 588)518 (64 - 581)
definitionCHROMAT_FILE: MSMg01no338_j05.b1 PHD_FILE: MSMg01no338_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:14 2005CHROMAT_FILE: MSMg01no338_j05.g1 PHD_FILE: MSMg01no338_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGAAAGACATAAGTTTCCATTTTGTATAAAGAAAAGTAGACATTG
CTAACCATATATATATTACAGAATACCCAAGTTACAGTCCACAGAACTCA
CAAAACTCAACAAGCTGAAGTGCCCAAGTTAGGTTGCCTCAGTCCCACTT
GGGAGAGAGAAGAAAGCAATCATAAGTGGGGAGGGAAGGAGGGGACCTGG
GAGGAAAGGACCTGGCTGGACAGGCAGGGTGTGTGTATAGGGGAGAGAGA
AACCTGATCTGGTATTGGGTGAGGGAAAAGGCCTGAAGCCCTGAGGGCTA
GCAGAAAGAATGTAAACAGGCAACCTCAGGAAATAGGAGCTTGGGGAACC
CTCAGAATTCACAGAAACCTGGGAGTTGAGAGATTCCCAGGACTCAAAGG
GAGGGACCTTAGATGAAATGCCAGACAGTAGGGAAAGGGGACTTATAAAA
CCCACCTCCTTTAGGAAGACAGGACATCAAGTGAGGAGGGAGGTTGCTAT
CCCACAGCCACATCTCTGACCCATAATTTTTCCTGTCTGAAAGAATTACA
GGGATGGAAATGGNAGAGACCCTGAGGAAAAGAAGGTCCAGGGACAGGTC
CAAAGAAGATCCAGCTTCAAGGTAGGTCCCAGCGCCTGACACAAGACTAT
GGAACGCTCCAAAAAAGGACCTCGCACAACTGCCCTGCAAAAAACCA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCCTTTCAATTTTAAACATCCCCATTGCAGTGCTAAC
ATGTTGTTGTGCTTATTCCTAAATTTAGCACTCTTAGGGATGCTCTTATA
GCCACATTACAAATACAAAGAACATGGATACTGTGGAAACTGTCTAAGAC
ATTATACATGGGCATTATCACCAAACACCTCCCACTATGTAAAAGTCACA
ATGTGGACTTTTGCTATAATGTTCTGTTTAGTCTTCAGAATTTTGTATAT
ACAATGAGCTGTAATCATATCTGCACTGTTTCCATCCCCCAGTCCTCTCA
TATCCTCTCGAATTATTTTCTTCCCAACTTCACAAGACTCTCTCTTTTTT
TCTTTTTGATAGCACATTAAAACCAACTAGTGCTACACATATGTATATGC
AAAACACTTAGTTGATTAAAGTGCTTTTTGTGAAAGTTGATAATATTGGA
TGAGAACTAACAATGGAAACATTATTCTTATTTTCAGNTGTTCTTATTTT
TAGTGTGGTCTTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTCTGT
CTGTCAGTCTGTCTCTCTGTGCATATGCGTATGTGTGTTTTTCCTTTGAT
TTTACCACCTTTAACCACATATAGTGGTCAATTAAAAATCCCACTGTTTC
ACTCATACACATAGGTCTTATTTTTTATTTTATTATATAAAAACACTACA
TCTCCCTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_j05.g1 MSMg01no338_j05.g1 CHROMAT_FILE:
MSMg01no338_j05.g1 PHD_FILE: MSMg01no338_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:14 2005
         (518 letters)



>mm_chr15_16662236_16663153
          Length = 918

 Score =  988 bits (511), Expect = 0.0
 Identities = 516/518 (99%), Gaps = 1/518 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctttcaattttaaacatccccattgcagtgctaacatgttgttgtgcttattcctaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctttcaattttaaacatccccattgcagtgctaacatgttgttgtgcttattcctaaa 260

                                                                       
Query: 61  tttagcactcttagggatgctcttatagccacattacaaatacaaagaacatggatactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttagcactcttagggatgctcttatagccacattacaaatacaaagaacatggatactg 320

                                                                       
Query: 121 tggaaactgtctaagacattatacatgggcattatcaccaaacacctcccactatgtaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggaaactgtctaagacattatacatgggcattatcaccaaacacctcccactatgtaaa 380

                                                                       
Query: 181 agtcacaatgtggacttttgctataatgttctgtttagtcttcagaattttgtatataca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtcacaatgtggacttttgctataatgttctgtttagtcttcagaattttgtatataca 440

                                                                       
Query: 241 atgagctgtaatcatatctgcactgtttccatcccccagtcctctcatatcctctcgaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgagctgtaatcatatctgcactgtttccatcccccagtcctctcatatcctctcgaat 500

                                                                       
Query: 301 tattttcttcccaacttcacaagactctctctttttttctttttgatagcacattaaaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tattttcttcccaacttcacaagactctctctttttttctttttgatagcacattaaaac 560

                                                                       
Query: 361 caactagtgctacacatatgtatatgcaaaacacttagttgattaaagtgctttttgtga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caactagtgctacacatatgtatatgcaaaacacttagttgattaaagtgctttttgtga 620

                                                                       
Query: 421 aagttgataatattggatgagaactaacaatggaaacattattcttattttcagntgttc 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 aagttgataatattggatgagaactaacaatggaaacattattcttattttcagttgttc 680

                                                 
Query: 481 ttatttttagtgtggtcttgtgtgtgtgtgtgtgtgtg 518
           |||||||||||||||||| |||||||||||||||||||
Sbjct: 681 ttatttttagtgtggtct-gtgtgtgtgtgtgtgtgtg 717


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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