Query= MSMg01no339_b02.b1 MSMg01no339_b02.b1 CHROMAT_FILE:
MSMg01no339_b02.b1 PHD_FILE: MSMg01no339_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:50 2005
(484 letters)
>mm_chr15_29133997_29134880
Length = 884
Score = 862 bits (446), Expect = 0.0
Identities = 475/485 (97%), Gaps = 2/485 (0%)
Strand = Plus / Plus
Query: 1 aggagaaat-tgattcaagaaggaggttataaacgttatctctaagtagttctatgagtc 59
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggag-aatatgattcaagaaggaggttataaacgttatctctaagtagttctatgagtc 259
Query: 60 aggcaaagtacacgtttacagattcacacacaggaaggtgncaggggagggaatgaagga 119
||||||||| |||||||||||||||||||||||||||| | ||||||||||| |||||||
Sbjct: 260 aggcaaagtgcacgtttacagattcacacacaggaaggggccaggggagggattgaagga 319
Query: 120 gatagagaaagagaagaatgatctatgcatatgttctacaaatttatgactgaaaattct 179
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gatagagaaagagaagaatggtctatgcatatgttctacaaatttatgactgaaaattca 379
Query: 180 caggttccataccattacagggaagtttacaccatctagttacattagtagcaaaaatcc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 caggttccataccattacagggaagtttacaccatctagttacattagtagcaaaaatcc 439
Query: 240 cctcttctatacacaatgtcaggtatcctaagacccagacagtgagaatgttatagattt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cctcttctatacacaatgtcaggtatcctaagacccagacagtgagaatgttatagattt 499
Query: 300 gatactctacacagacacagaagcactcccttcatcagctatttatgacaaactctcatc 359
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gatactctgcacagacacagaagcactcccttcatcagctatttatgacaaactctcatc 559
Query: 360 agcattctgcatttagcccagcgggcaggctctccatcctcttcggtggcaccgaggagc 419
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agcattctgcatttagcccagagggcaggctctccatcctcttcggtggcaccgaggagc 619
Query: 420 cttgtttttaatatgactgtccccaaggtgcatttggttataaagcaaactcttccctag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cttgtttttaatatgactgtccccaaggtgcatttggttataaagcaaactcttccctag 679
Query: 480 ctcga 484
|||||
Sbjct: 680 ctcga 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_b02.g1 MSMg01no339_b02.g1 CHROMAT_FILE:
MSMg01no339_b02.g1 PHD_FILE: MSMg01no339_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:50 2005
(496 letters)
>mm_chr11_55149068_55149963
Length = 896
Score = 928 bits (480), Expect = 0.0
Identities = 492/496 (99%)
Strand = Plus / Plus
Query: 1 cacttgagctctctgggctcagctcctgctacccccaaggcatgagaacagagttggtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacttgagctctctgggctcagctcctgctacccccaaggcatgagaacagagttggtct 260
Query: 61 ctgcagtcttctgagtcagctctacatccagagcctgtcaaaccaccacctttgctggca 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 ctgcagtcttctgagtcagctctacatccagagcctgtcaaaccactacctttgctggca 320
Query: 121 tatagtcacatttagtcacagcgtatgcccctgtcacacagccaggcaagccaagggtct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatagtcacatttagtcacagcgtatgcccctgtcacacagccaggcaagccaagggtct 380
Query: 181 gggtgggcacccttaaaggactacaggatgaagcatgggaagccctactgtttgatgccc 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 gggtgggcacccttaaaggactacaggatgaggcatgggaagccctactgtttgatgccc 440
Query: 241 tcccaagtcttccattctctttattaagtagctttatctgctacggggtctctgtgcccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcccaagtcttccattctctttattaagtagctttatctgctacggggtctctgtgcccc 500
Query: 301 tcagacacataagaggctagccccttgcttcagtttactttctaaaactacataggaaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcagacacataagaggctagccccttgcttcagtttactttctaaaactacataggaaat 560
Query: 361 cttcctataataaagtctcaaccttggaacccaagcaaaagacaaaagtccaaccttccc 420
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 561 cttcctataataaagtctcagccttggaagccaagcaaaagacaaaagtccaaccttccc 620
Query: 421 ctcgtgcaaatgtgagcttctcttcctcctcaagtccggaaccttatcctttcagattcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcgtgcaaatgtgagcttctcttcctcctcaagtccggaaccttatcctttcagattcc 680
Query: 481 tgttgactagtgccca 496
||||||||||||||||
Sbjct: 681 tgttgactagtgccca 696
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
