Query= MSMg01no339_h05.b1 MSMg01no339_h05.b1 CHROMAT_FILE:
MSMg01no339_h05.b1 PHD_FILE: MSMg01no339_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:17 2005
(365 letters)
>mm_chr15_35630149_35630911
Length = 763
Score = 663 bits (343), Expect = 0.0
Identities = 358/365 (98%), Gaps = 5/365 (1%)
Strand = Plus / Plus
Query: 4 ggaattctgaattctcttgcctttacattccaagtgctgtgattacacgatgt---acca 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 ggaattctgaatcctcttgcctttacattccaagtgctgtgattacacgatgtaccacca 260
Query: 61 ccaccacaagcttaagtttctttaaataaataataccattgactgggctcactgaaggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaccacaagcttaagtttctttaaataaataataccattgactgggctcactgaaggaa 320
Query: 121 gctctttacaccaaagcccattttacctaccatatcactgagttgaaatagcaattcctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctctttacaccaaagcccattttacctaccatatcactgagttgaaatagcaattcctc 380
Query: 181 ataatatttnnttctaacctataatactgagaaattagaagtataaaaataaactcttgt 240
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataatattt--ttctaacctataatactgagaaattagaagtataaaaataaactcttgt 438
Query: 241 ttcttgataaaataaatacaattttctatttatgtaaaatttccaatgtggacgatcttt 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttcttgataaaataaatacaatgttctatttatgtaaaatttccaatgtggacgatcttt 498
Query: 301 gtattaaaagtccagtgtaactacctctcccagccccagcatgccatactattccataaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gtattaaaagtccagtgtaactacctctcccagccccagcatgccatactattccataaa 558
Query: 361 tattt 365
|||||
Sbjct: 559 tattt 563
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 763
Length adjustment: 9
Effective length of query: 356
Effective length of database: 754
Effective search space: 268424
Effective search space used: 268424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_h05.g1 MSMg01no339_h05.g1 CHROMAT_FILE:
MSMg01no339_h05.g1 PHD_FILE: MSMg01no339_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:17 2005
(605 letters)
>mm_chr15_35794862_35795867
Length = 1006
Score = 1087 bits (562), Expect = 0.0
Identities = 595/606 (98%), Gaps = 1/606 (0%)
Strand = Plus / Minus
Query: 1 ctgaattgatatattcaggaagaaagaaaactaagatgcaatccaggagaggagagtcca 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 806 ctgaattgatatattcaggaagaaagaaaactaagatgtaatccaggagaggagagtcca 747
Query: 61 ctaggaaaggagaaaggctgagtgagtgagtggatgctgtctgttacattaaacccacac 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 746 ctaggaaaggagaaaggctgagtgagtgagtggacgctgtctgttacattaaacccacac 687
Query: 121 actaaaagtgccagagacttctctgtgaacggacacatttgttactcagtgacacacagc 180
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 686 actaaaagtgccagagacttctctgtgaatggacacatttgttactcagtgacacacaac 627
Query: 181 gttaaaagtaagt-agtgagggttgctcctgtgtttataactcaccctacagttgtgcac 239
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 626 gttaaaagtaagtgagtgagggttgctcctgtgtttataacttaccctacagttgtgcac 567
Query: 240 aatgctctaacgagaaactaaaaatgcaaacaactacaaaggtttttcccaaatcattgc 299
||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||
Sbjct: 566 aatgctctaacgagaaactaaaaattcaaacaactacaaagatttttcccaagtcattgc 507
Query: 300 actcattatagaaatttttaaggagggtaaaacattaagatgtaattcaaggtcaataag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 actcattatagaaatttttaaggagggtaaaacattaagatgtaattcaaggtcaataag 447
Query: 360 caagtggatatatattgatatgtcttaagcctataacttttacatatattaaaacatata 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 caagtggatatatattgatatgtcttaagcctataacttttacatatattaaaacatata 387
Query: 420 ccatttattaaacttttaaactcattaatgtaacattttactctacagtgggcatttaat 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tcatttattaaacttttaaactcattaatgtaacattttactctacagtgggcatttaat 327
Query: 480 acatttattgaataaacaaattgaggttaatgagactaaccaaaatcaaattctcacaaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 acatttattgaataaacaaattgaggttaatgagactaaccaaaatcaaattctcacaaa 267
Query: 540 ttttagtagggacatttatacataaaataagaattaaactaagtcacaatattaaattat 599
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttttagtaggaacatttatacataaaataagaattaaactaagtcacaatattaaattat 207
Query: 600 tttctc 605
||||||
Sbjct: 206 tttctc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1006
Length adjustment: 10
Effective length of query: 595
Effective length of database: 996
Effective search space: 592620
Effective search space used: 592620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
