BAC Information

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BAC

Clone NameMSMg01-339K17
Chromosome15 (Build37)
Map Location 52,056,031 - 52,220,442
singlet/doubletdoublet
Overlap geneLOC665219, Slc30a8
Upstream geneLOC100039662, Eif3s3, LOC100039679, D530033C11Rik, Rad21, Aard, LOC100039720
Downstream geneLOC100039748, Thrap6, LOC100039745, Ext1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-339K17.T7 (MSMg01no339_k17.b1)MSMg01-339K17.TJ (MSMg01no339_k17.g1)
ACCAG453897AG453898
length739762
length of high quality
(start - end)		697 (43 - 739)503 (77 - 579)
definitionCHROMAT_FILE: MSMg01no339_k17.b1 PHD_FILE: MSMg01no339_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:33 2005CHROMAT_FILE: MSMg01no339_k17.g1 PHD_FILE: MSMg01no339_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,056,031 - 52,056,705)(52,220,070 - 52,220,442)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGTTCAGATAACAAAAAAGGAGCAACACTACCTAGGGACAGGATATTG
GGAACAGACTCTAAGTAGGTGAGACAAATCCTAGAACACTCACTGTAAGA
ATGGCCTGGAAGCAGCAGGCAGAAAAGCAGATTTGATTTTACAATGGTAT
CTAGTCACAGAAAATAGCAGACTCTTTGGGGGCAGGAAACACACAAAATG
GAATCACAGCATGCCAGGGAGATTGTCCTGTTCTTCAGTAATACGGTTCT
TAAAGAAAGGGCTATTCCATTTTGATAGCTCAGCAGCAGAAGGACCAAGA
TGAATTGGAAGAAACTCTGAGCAGAGTAATGAGTGGATAAGTACCTTCTG
ATGGAGGAATTGACGATGTATAATGCTTTCAAGGAACCATCATCATAGTT
TTCCATTACAATGCTAGGAACAAGAGACACCAAGTATGGAGTGAAATTAC
TTGGCTGCAGAGAGATTTAGTGGAAGATGATTGCATATGGTTAAGGATAT
CAGAAAATAGTTTAACCTTGGGAGAATCAATTTATCAACAAAATGATCAA
CCAAACAAGAAGTACGAACAACTTACCATAAACTAGATATCTTTTCGTCA
GTAGTCTCAGCTATGGGGTGCTATGATAATATAAACTATAATCCCTTTGC
CTTGACTATTCTTTGTTATTTCTTGAGGTTTTTTAAACT

CGAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTTTGATGTGTTATAATTAAACA
GAACACACAATGGCTTAGAATAAGATAAGAATACATCTAATTGTGTATAA
CATATGCTTACCTTACATATGTTCTGTTTATAGAGGATAGAGTGCCCAGA
GAGACCTGTGTATATCATTCTTGGAATGATTTGCAGAAATATGAGAAGAT
GACTTTCTTGGCTGCCAGTTCTATCAATTGCCAGGAGAGGTTTACTAAAG
CATCCACCTACATTGTGGGCTGTATTTCCTCCTAGATTTGTTGGGTTTTG
CACGGAGTTTTGGCTCACTCTTCTTTAGTGCATAACTAAGATTGTTATAC
CTTATCATCCAGTTGAGCCCTTTATCGCCACATAATTTTATATCTCATAA
TGCTTTTAACTGAAGTGTGCATGTAGAATATGTGTTAATATTGTTGGTCT
TGGTATTTTTGTGTCTGCATAGTTTAATATTTTTGTTTTCTAANAGCACT
TAACATATAATAATTCTAATATTTATAAGGTACATAGGATGTATGTCTCT
ACATACATATACACACACATATACAGTACTCAATATGTTGTGTGTGTATG
TGCATACCCATAATGTACAATGTATAGGATATGTATATATGCGGGATTGC
CTTAGGAAGGGGTTCTTTTGGTGTGAGGAATAACCATGACCTCGGGCATT
TTTTGAAGAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no339_k17.b1 MSMg01no339_k17.b1 CHROMAT_FILE:
MSMg01no339_k17.b1 PHD_FILE: MSMg01no339_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:33 2005
         (697 letters)



>mm_chr15_52055809_52056905
          Length = 1097

 Score = 1290 bits (667), Expect = 0.0
 Identities = 673/675 (99%)
 Strand = Plus / Plus

                                                                       
Query: 23  aaaaaaggagcaacactacctagggacaggatattgggaacagactctaagtaggtgaga 82
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 aaaaaaggagcaacactacctagggacaggatattgggaacagactctaagtaggtgaga 282

                                                                       
Query: 83  caaatcctagaacactcactgtaagaatggcctggaagcagcaggcagaaaagcagattt 142
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 caaatcctagaacactcactgtaagaatggcctggaagcagcaggcagaaaagcagattt 342

                                                                       
Query: 143 gattttacaatggtatctagtcacagaaaatagcagactctttgggggcaggaaacacac 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gattttacaatggtatctagtcacagaaaatagcagactctttgggggcaggaaacacac 402

                                                                       
Query: 203 aaaatggaatcacagcatgccagggagattgtcctgttcttcagtaatacggttcttaaa 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 aaaatggaatcacagcatgccagggagattgtcctgttcttcagtaatacggttcttaaa 462

                                                                       
Query: 263 gaaagggctattccattttgatagctcagcagcagaaggaccaagatgaattggaagaaa 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gaaagggctattccattttgatagctcagcagcagaaggaccaagatgaattggaagaaa 522

                                                                       
Query: 323 ctctgagcagagtaatgagtggataagtaccttctgatggaggaattgacgatgtataat 382
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 523 ctctgagcagagtaatgagtggataagtagcttctgatggaggaattgacgatgtataat 582

                                                                       
Query: 383 gctttcaaggaaccatcatcatagttttccattacaatgctaggaacaagagacaccaag 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 gctttcaaggaaccatcatcatagttttccattacaatgctaggaacaagagacaccaag 642

                                                                       
Query: 443 tatggagtgaaattacttggctgcagagagatttagtggaagatgattgcatatggttaa 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tatggagtgaaattacttggctgcagagagatttagtggaagatgattgcatatggttaa 702

                                                                       
Query: 503 ggatatcagaaaatagtttaaccttgggagaatcaatttatcaacaaaatgatcaaccaa 562
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 ggatatcagaaaatagtttaaccttgggagaatcaatttatcaacaaaatgatcaaccaa 762

                                                                       
Query: 563 acaagaagtacgaacaacttaccataaactagatatcttttcgtcagtagtctcagctat 622
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 acaagaagtacgaacaacttaccataaactagatatcttttcgtcagtagtctcagctat 822

                                                                       
Query: 623 ggggtgctatgataatataaactataatccctttgccttgactattctttgttatttctt 682
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 ggggtgctatgataatataaactataatccctttgccttgactattctttgttatttctt 882

                          
Query: 683 gaggttttttaaact 697
           |||||||||| ||||
Sbjct: 883 gaggtttttttaact 897


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space:   746769
Effective search space used:   746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no339_k17.g1 MSMg01no339_k17.g1 CHROMAT_FILE:
MSMg01no339_k17.g1 PHD_FILE: MSMg01no339_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:34 2005
         (503 letters)



>mm_chr15_52220070_52220972
          Length = 903

 Score =  698 bits (361), Expect = 0.0
 Identities = 370/373 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtttgatgtgttataattaaacagaacacacaatggcttagaataagataagaatacat 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 agtttgatgcgttataattaaacagaacacacaatggcttagaataagataagaatacat 314

                                                                       
Query: 61  ctaattgtgtataacatatgcttaccttacatatgttctgtttatagaggatagagtgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ctaattgtgtataacatatgcttaccttacatatgttctgtttatagaggatagagtgcc 254

                                                                       
Query: 121 cagagagacctgtgtatatcattcttggaatgatttgcagaaatatgagaagatgacttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 cagagagacctgtgtatatcattcttggaatgatttgcagaaatatgagaagatgacttt 194

                                                                       
Query: 181 cttggctgccagttctatcaattgccaggagaggtttactaaagcatccacctacattgt 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 193 cttggctgccagttctatcaattgccaggagagggttactaaagcatccacctactttgt 134

                                                                       
Query: 241 gggctgtatttcctcctagatttgttgggttttgcacggagttttggctcactcttcttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 gggctgtatttcctcctagatttgttgggttttgcacggagttttggctcactcttcttt 74

                                                                       
Query: 301 agtgcataactaagattgttataccttatcatccagttgagccctttatcgccacataat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  agtgcataactaagattgttataccttatcatccagttgagccctttatcgccacataat 14

                        
Query: 361 tttatatctcata 373
           |||||||||||||
Sbjct: 13  tttatatctcata 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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