BAC Information

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BAC

Clone NameMSMg01-340I21
Chromosome15 (Build37)
Map Location 14,977,171 - 14,977,505
singlet/doubletsinglet
Overlap geneLOC100040024
Upstream geneLOC674819
Downstream geneLOC100040033, LOC100040046, EG239341
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340I21.T7 (MSMg01no340_i21.b1)MSMg01-340I21.TJ (MSMg01no340_i21.g1)
ACCAG454565AG454566
length7531,244
length of high quality
(start - end)
351 (45 - 395)---
definitionCHROMAT_FILE: MSMg01no340_i21.b1 PHD_FILE: MSMg01no340_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:35 2005CHROMAT_FILE: MSMg01no340_i21.g1 PHD_FILE: MSMg01no340_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTCCATGGAAGAAACTTCTGAAGATGACAATTTCTCACTAGTAAC
AACTGCTTAATTTCTCACAGACTTGCCCTAACTTTGGCTAGTCCTGTAAT
GAGTGAATGCCAAAGCAGCTCTCAATAAGAATGCAGCACTTTTATACCAC
AGAGTAAGTTCATTACTATTTGAAAAATGAACACAGGGCCCCCAATGGGA
GAAACTAGAGAAAGCACCCAAGGAGCTGAAAGGGGTCTACAATCCTATAG
GTGGAACAATATGAACTAACCAGTACCCCCAGAGCTTGGTTTCTCTAGAT
GCATAATGGAGCAGAAAGAATGGCCTAGTCGGCCATCACTGGGGAAGAAG
AAGGCCCCTTGGTATTGCAAACTTTATATGCCCCAGTACAGGGGAATGCC
AGGGCCAAGAAGCAGGAGTGGGTGGGTAGGGGAGCAGGAANGGGGAAGAA
GGAGATTATCAGGACCTTTAGGGATAACATTTGAAATGTATATAAAGGAA
ATATCTAATAAAAAAAGAAAGAAAGAAAGAAAGAANAAAGCCAGTGTACG
GTACTATAAAATCAAAATGACATTTCAGCAGCTATTTTATGTTTGGGAAA
GTTTAAGTGGTTGATTCCTCATTTTTATTTGGATTCAGTTAAACTGTTGA
TACTTATTAAGGAATTTGGATCACATCAGCTTTGTCATATGGAACATATA
AAT
NCCCCACAATATTTTTTTTTNNAGNNNNNNNNNCNGGCCTTTCTAAACAT
CAGGGGAGNCNAAGANAAGGTTTTTCTCGCAACAACATAGGCTTCCCCAG
TACACAGGCACTTCTTTCTTATATAGGGGTTCCACACTCAGTATTGTCCG
CCATCAACAGCCCANCACAGCACACACACCCTCATTGCATACTGATATCC
TTACCTAGTCTCTAGTTGAGAGGGCGGAGTCGCCATTTATGACTCATATG
TCACGACCCCGAAACCGACAGGGAGGAAAGAGCACACCTCACGCAGTCCA
AGCACATTTGGCTTATCTGGGTGCCGATCTTATACGAGATAGAGACGANA
AGTGGTTGNGATACATCTCNATAGGCCCCCATGGCNTGTATTGAGAGTGG
AGTATGTATCTTACCTGCTCTCACACGGTCAGACGACGATTTTCATCTCG
CAACTACTTATAGTACTCTAGCTTGTTCTTTCTATTATTTGTTTCCCGTA
GCGTGATCTCTATTCATTTGTAACAACATAGGTTCCTTATATTTGTATAC
CTCTCCTCATTCCACCACATATAATTTAAGGCTCAGCTCATGGATAGCCA
ATAGCCGAGAGAGAGAATGCATTATTGTTTAATATACCAAGTACAAACCA
NCCTACACATAGAGCATACTTGAATAAAATAGAAACAACAAATAAAANAG
AACTATTAATCCTTCGATTCTTTTAACCTCATTTATTCCTTACTACACTT
TATTAGTATGTACAACTCCTCTCCTTATTTTTCGCCTTTTATTATTCNCG
NCATATTTCTTATGCCATCTCTCTCTTTACTTATTCCACATCTTTCTCAA
TATATACTATTGTCCCTCCGTTTACTCTACCACTTGACTATTTCTCGTCC
TTCTCTCTTCTCGATTATTGATATCCTATCCTCTCTAATACCCTATGTCA
TTATCTCATATCACCTACCTTCACTTCCATNTTTTTTATTGCGCTTCCCT
CATTCGATAATACTATCGCAGTCTATGCTATTGCTCTCCTATATTCTCGC
GTGTTCACTCGACCGTTCTCATTCCTCCACGTTTCCTATAGATCCTATAA
CATCCACATTCACACCTCACTCTACCTCTAGTATCTCCTCTGCAATCCTT
ACATGACTGCATACCACGCGAGTCACGTATACTCTACTTACTATNTCATT
TGCGNATGAGCACTACGTTCTAATCANCTCTAGACTATACTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_i21.b1 MSMg01no340_i21.b1 CHROMAT_FILE:
MSMg01no340_i21.b1 PHD_FILE: MSMg01no340_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:35 2005
         (351 letters)



>mm_chr15_14976967_14977715
          Length = 749

 Score =  536 bits (277), Expect = e-156
 Identities = 328/345 (95%), Gaps = 10/345 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttccatggaagaaacttctgaagatgacaatttctcactagtaacaactgctt 64
           ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 205 gaattccttccat-gaagaaacttctgaagatgactatttctcactagtaacaactgctt 263

                                                                       
Query: 65  aatttctcacagacttgccctaactttggctagtcctgtaatgagtgaatgccaaagcag 124
           |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 264 aatttctcacagacttgccctaacattggctagtcttgtaatgagtgaatgccaaagcag 323

                                                                       
Query: 125 ctctcaataagaatgcagcacttttataccacagagtaagttcattactatttgaaaaat 184
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctctcaataaga-tgcagcacttttataccacagagtaagttcattactatttgaaaaat 382

                                                                       
Query: 185 gaacacagggcccccaatgggagaaactagagaaagcacccaaggagctgaaaggggtct 244
           ||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 383 gaacacaggacccccaatgg-agaaactagagaaagcacccaaggagctgaa-ggggtct 440

                                                                       
Query: 245 acaatcctataggtggaacaatatgaactaaccagtacccccagagcttggtttctctag 304
           |||||||||||||||||| |||||||||||||||||||||| |||||||| || ||||||
Sbjct: 441 acaatcctataggtggaa-aatatgaactaaccagtacccc-agagcttgatt-ctctag 497

                                                        
Query: 305 atgcataatggagcagaaagaatggcctagtcggccatcactggg 349
           ||||||| || ||||||| || ||||||||| |||||||||||||
Sbjct: 498 atgcata-tgtagcagaa-ga-tggcctagttggccatcactggg 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 749
Length adjustment: 9
Effective length of query: 342
Effective length of database: 740
Effective search space:   253080
Effective search space used:   253080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)