BAC Information

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BAC

Clone NameMSMg01-341K04
Chromosome15 (Build37)
Map Location 100,455,659 - 100,456,090
singlet/doubletsinglet
Overlap geneBC004728
Upstream geneRacgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2
Downstream geneBin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341K04.T7 (MSMg01no341_k04.b1)MSMg01-341K04.TJ (MSMg01no341_k04.g1)
ACCAG455383AG455384
length781749
length of high quality
(start - end)
404 (43 - 446)433 (80 - 512)
definitionCHROMAT_FILE: MSMg01no341_k04.b1 PHD_FILE: MSMg01no341_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:56 2005CHROMAT_FILE: MSMg01no341_k04.g1 PHD_FILE: MSMg01no341_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAA
TTCCAGGACTGCCAGGGCTGCACAGAGAAACCCTGTGCCTTAGTTAGAGT
TTCTATTGCTGTGACAAAATATCATGATCAAAAAAGCAAGCTGGGAAGCC
AGGCGTGGTGGCACACGCCTTTAATCCCAGTAATCAGGAGGCAGAGGCAG
GCAGATCTCTGTGAGTTTTGAGAGGCCAGCCTGGTCTACAAAGAGAGTTC
CAGGACATTGAGGGCTACACAGAGAAGCCCCTCCCCTCCAAAAAAAAGAA
AAGAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG
AAAGAAAGAAAGAAAGGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG
AAAGAAAGAAAGGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGACAGAAAG
ATAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGACAAAGAAAGAAAGAAAG
GGAAAGAAAGAAAGAAAGAAAGAATGAAAGATAGACAGAAAGACAAACAA
AGAACGATAGAAAGACCGGGCAAGTACGAAAGACAGAGACAAAGATAGAA
AGACAGAGAGGGATAGAAATACAGAATGGAAAGAACGGAAAGAACAGAAA
GATAGGGAACTCATTGACACCAATCACCGTGGAAAGAAACCAAATTAATT
TATCCCAATGAACATTTCGCACCGCAATTATTCCATAGTATTTGTCCTTA
CACGTCACTTGAACGGACCGTTACGCACCTN
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCTGGACCACATAGTGACTT
CCAGGACAGCCAGGACTTTGCAGAGAGACCTCTCTCACCACCCCCACCTC
CACTCCCAAATTAAAAAAAGGGTTGGGCTGGCCTTGATACTGGAAAGCAT
TCCTGACAGCCCATCTCTGCTTTTTCGGTTGTGGGAACAAGGGCAATTCA
CTCACGAGGTTCTTGTTGTTCTCTGACCCTTTACTCTTGACCCCTTTTGC
CCCAGCTCACAGGGACTGATGTCACTTCACCCATGCACCATGGAACCACA
TTAGCGTTCCTTCGACAGCTCTGATGGAGTAGCCCTTTCTAGGCCCAGTC
CTAGTGCCACTCAATGGCTTCCACCACCCCCTGGCACAAATACCAACCAG
GCCCCTCTGCTGCTTTTCTGATCCTGGGATGTTCAGCTGGTGGAACCTCT
TGAGGCGTGGTAGGGTGTGAGGCGCGGTAGTTTGTGCATTCCCTTCCCCC
CCCCCTTTTCTTTCTCTCTCTTTTGTCTCGCCCTTCTCCCTCCCCCATCC
TCCCCCATTAACACTCTCTCTCCCCATCCCCATTTTTGTATTTGCCTCCG
CGTTACCATTATTCGTATTTCCTTCCCTTTTCCACCACCTTCTTTCCTTC
TTCCGTTTTCTCCCCGCTTTTGCCGTTTTATCCCCCCCTTTTTTCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_k04.g1 MSMg01no341_k04.g1 CHROMAT_FILE:
MSMg01no341_k04.g1 PHD_FILE: MSMg01no341_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:56 2005
         (433 letters)



>mm_chr15_100455402_100456233
          Length = 832

 Score =  777 bits (402), Expect = 0.0
 Identities = 426/434 (98%), Gaps = 3/434 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcctggaccacatagtgacttccaggacagccaggactttgcagagagacctctctcacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gcctggaccacatagtgacttccaggacagccaggactttgcagagagacctctctcacc 630

                                                                       
Query: 61  acccccacctccactcccaaattaaaaaaagggttgggctggccttgatactggaaagca 120
           | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 629 atccccacctccactcccaaa-taaaaaaagggttgggctggccttgatactggaaagca 571

                                                                       
Query: 121 ttcctgacagcccatctctgctttttcggttgtgggaacaagggcaattcactcacgagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ttcctgacagcccatctctgctttttcggttgtgggaacaagggcaattcactcacgagg 511

                                                                       
Query: 181 ttcttgttgttctctgaccctttactcttgaccccttttgccccagctcacagggactga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 510 ttcttgttgttctctgaccctttactcttgaccccttttgccccagctcacagcgactga 451

                                                                       
Query: 241 tgtcacttcacccatgcaccatggaaccacattagcgttccttcgacagctctgatg-ga 299
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 450 tgtcacttcacccatgcaccgtggaaccacattagcgttccttcgacagctctgatgaga 391

                                                                       
Query: 300 gtagccctttctaggcccagtcctagtgccactcaatggcttccaccaccccctggcaca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gtagccctttctaggcccagtcctagtgccactcaatggcttccaccaccccctggcaca 331

                                                                       
Query: 360 aataccaaccaggcccctctgctgcttttctgatcctgggatgttcagctggtggaacct 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 330 aataccaaccaggcccctctgctgcttttctgatcctgggatgttcagctgatggaacct 271

                         
Query: 420 cttgaggcgtggta 433
           ||  ||||||||||
Sbjct: 270 cta-aggcgtggta 258


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 832
Length adjustment: 9
Effective length of query: 424
Effective length of database: 823
Effective search space:   348952
Effective search space used:   348952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)