BAC Information

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BAC

Clone NameMSMg01-341O05
Chromosome15 (Build37)
Map Location 63,365,687 - 63,366,153
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040430, Tsg101-ps, EG239502
Downstream geneEG432959, LOC672194, Mlze, AI987692, Gsdmdc2, 9930109F21Rik, LOC665769, 9030605I04Rik, 4933426G20Rik, 0910001A06Rik, Ddef1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341O05.T7 (MSMg01no341_o05.b1)MSMg01-341O05.TJ (MSMg01no341_o05.g1)
ACCAG455573AG455574
length749828
length of high quality
(start - end)		473 (39 - 511)168 (75 - 242)
definitionCHROMAT_FILE: MSMg01no341_o05.b1 PHD_FILE: MSMg01no341_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:15 2005CHROMAT_FILE: MSMg01no341_o05.g1 PHD_FILE: MSMg01no341_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGGATCCGCGGAATTC
AAACTCATTACCCTTCTGGCTCAGCCTTGCACATGTTGAGATTCAGGGTA
TATAAGTGCCAGCATCCTCAGCCTAAACTCCTTGAACTCTCTTTTTCTTA
ATTGAAAATGAAATTTGCATACAATATATTCTGATCATACTTTTCCCTCT
CCCAACTCCTTCCAGAACCTTCCATCTTCTAAGCCTCCCGACTCTGTGCC
CTTTCTTCTTTTCTCTCCTAAACTTATACTCTTGACTCATTCCTGAAAGG
AAAGAGGAACAATGTTAGACAATTTGGAAGATTTAGACAAATCTGGTCCA
TCGTTTGTACAATAAATCTAGTGCATGGTGGTTCTGCTCTTTGGAAATCA
TCTCTGCCATGGGGTGAGAGTGATAATAACCAACCAATGCCCACTAGTGA
CTTGTAATATGTCAGGCACTATTTTAGAACTTCAAACTCCAGTATTTTAT
AATGGAAAAAAATGTGACTATAAAACCTGATGAAAAACGTCAGATGGTAT
AATAAAGACTGATGAAGGAACGCACTCTTGGTCAGATACCCCCCAAAGCA
AACAACCTTTTTTTATTCTCATTGGTGGGAAAAATTAATCTTTCAATTTT
ACTCCACCCCAACCTTTACCTTATTTTATTTTCATTTTCCCCACAATATT
CTCCTCTATTTAACTTTTTACCTTAAAACCCTTTCCTTTACTATCCCCG

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTGTTTATTTACTGCTGGGCATGCG
ACCTACTCTTAGGAGTAGCTTGCTTCCCTTTGGAGAAAACTTATTTTTCA
TTTGTAACTGCCTACCAATTGGAGGTTGCTTCTGGGTCAGGATGAGGTGT
TTGTTAGGATGTGGGATTTGTGCTTTAGCTCTAGGACTCCCTCTAGGCTC
TGTGCAGGTCCTGCGTATGCTGCCTCACCCTCTGATGTCACACGTGTGAT
CCTGTTGATGGTCCTGCTTTTTTATTGCCTCTCACTTCCTCTGTCTCCCA
TATTCTTTCCGCCTCTCCCCTTGCACATCTCCTTGTTTTCTTATTTACCT
CTTTTTTCCCCCTCTTTCCCCCCCCCTTATTCTTTGATCTGCTCCCCCCT
CTACCATTTTTTCCCCTTATATTCTGCTTTTTTTTTCCCTACCCTTCTGT
CCTTCCTTTCCTTTCTCTTGCACTTTCTCTTCTTATTTTCCGTCCCTCCC
CTTCCCCTTTTCCTTTTATTTTTTTCTGTCCCTTCTTCTTTTCCCTTTTT
TCTTCCCCTCTTCTTTTCCCCCCCCTCTTTTCTCCTTTTCTTTTTTTTTA
CCCCTCTCCCCCTTTCCATTCCTTCCCTCCCTTATACCTTTTTCCTTTAC
CCACTTTTCCCCTTCTTTTTTCCCTTTTTTTTTTCTTTTTTCCCCCCGCT
CTTTTCCCCCCTTTTTTTCCCTTCTTTTTTTTCCGCTTACCTTCCCCTTT
ACAATTTTCCTCTTCTTCCTTTTTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_o05.b1 MSMg01no341_o05.b1 CHROMAT_FILE:
MSMg01no341_o05.b1 PHD_FILE: MSMg01no341_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:15 2005
         (473 letters)



>mm_chr15_63365481_63366353
          Length = 873

 Score =  864 bits (447), Expect = 0.0
 Identities = 462/467 (98%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcaaactcattacccttctggctcagccttgcacatgttgagattcagggtatata 66
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcaaactcatgatccttctggctcagccttgcacatgttgagattcagggtatata 266

                                                                       
Query: 67  agtgccagcatcctcagcctaaactccttgaactctctttttcttaattgaaaatgaaat 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 agtgccagcatcctcagcctaaactccttgaactctctttttcttaattgaaaatgaaat 326

                                                                       
Query: 127 ttgcatacaatatattctgatcatacttttccctctcccaactccttccagaaccttcca 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ttgcatacaatatattctgatcatacttttccctctcccaactccttccagaaccttcca 386

                                                                       
Query: 187 tcttctaagcctcccgactctgtgccctttcttcttttctctcctaaacttatactcttg 246
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 387 tcttctaagcctcccgactctgtgccctttcttcttttctctcctaaacgtatactcttg 446

                                                                       
Query: 247 actcattcctgaaaggaaagaggaacaatgttagacaatttggaagatttagacaaatct 306
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 447 actcattcctgaaaggaaagaggaacaatgggagacaatttggaagatttagacaaatct 506

                                                                       
Query: 307 ggtccatcgtttgtacaataaatctagtgcatggtggttctgctctttggaaatcatctc 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ggtccatcgtttgtacaataaatctagtgcatggtggttctgctctttggaaatcatctc 566

                                                                       
Query: 367 tgccatggggtgagagtgataataaccaaccaatgcccactagtgacttgtaatatgtca 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tgccatggggtgagagtgataataaccaaccaatgcccactagtgacttgtaatatgtca 626

                                                          
Query: 427 ggcactattttagaacttcaaactccagtattttataatggaaaaaa 473
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ggcactattttagaacttcaaactccagtattttataatggaaaaaa 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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